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Analyzed about 5 hours ago. based on code collected about 5 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 22, 2024 — Aug 22, 2025 Showing page 12 of 61 Search / Filter on:
More changes to support VariantTracks.	Eric Smith	More...				over 13 years ago
Buttonoids on PopupPanel now invert on mouse-over. Fixed SortableRecordCodec to work with lines > 64k (happens in some 1000genomes VCF files).	Eric Smith	More...				over 13 years ago
If a cached stream gets an IOException, we now delete the cache file and retry, as a workaround for cache corruption.	Eric Smith	More...				over 13 years ago
PluginController doesn't waste it's time installing an update if it sees that the update is no newer than what it already has.	Eric Smith	More...				over 13 years ago
Added PopupEvent.getRecord() so that listeners can tell which record the popup is being popped for.	Eric Smith	More...				over 13 years ago
More cleanup of popup code.	Eric Smith	More...				over 13 years ago
Restored PopupEvent for 2.0.0-alpha2 SDK.	Eric Smith	More...				over 13 years ago
Rudimentary rendering of a VCF track.	Eric Smith	More...				over 13 years ago
Plugins now have a way to access the plugin toolbar.	Eric Smith	More...				over 13 years ago
Made distinction between DataFormats and FileTypes clearer.	Eric Smith	More...				over 13 years ago
Made distinction between DataFormats and FileTypes clearer.	Eric Smith	More...				over 13 years ago
Added stubs for Variant tracks. Made distinction between DataFormats and FileTypes clearer. Fixes to support formatting of VCF files. Removed some obsolete classes.	Eric Smith	More...				over 13 years ago
Renaming BAMFilterDialog.	Eric Smith	More...				over 13 years ago
Renaming BAMFilterDialog.	Eric Smith	More...				over 13 years ago
Renaming BAMFilterDialog.	Eric Smith	More...				over 13 years ago
Renaming BAMFilterDialog.	Eric Smith	More...				over 13 years ago
BAM filter dialog hooked into new filtering mechanism.	Eric Smith	More...				over 13 years ago
Allow for ranges to be expressed backwards (e.g. 1000-900). According to Miško some tools (Blast?) may use an inverted range to indicate a range on the reverse strand.	Eric Smith	More...				over 13 years ago
Updated Data Table for 2.0.0 API. Null pointer in UCSC Chooser when sequence track loaded from Recent Tracks menu.	Eric Smith	More...				over 13 years ago
Removed obsolete dist/plugins directory.	Eric Smith	More...				over 13 years ago
ArrayIndexException because SGD genes were mistaken as RefSeq genes.	Eric Smith	More...				over 13 years ago
GraphPane.render now catches and reports exceptions thrown by actual track renderer. Created constants for RenderingException priorities.	Eric Smith	More...				over 13 years ago
UCSC Navigation dialog was coming up with no initial track selected.	Eric Smith	More...				over 13 years ago
Added hack to swap name and name2 columns when it looks like a Tabix file contains RefSeq genes. Fixed constructor which supplies name to Bookmarks.	Eric Smith	More...				over 13 years ago
Fixed dictionary lookups for SQL gene tracks.	Eric Smith	More...				over 13 years ago
NullPointerException when genome was set in Savant.	Eric Smith	More...				over 13 years ago
Added RecordFilter argument to getRecords() calls.	Eric Smith	More...				over 13 years ago
Fixed MiscUtils.getMessage() because some exceptions return null for getMessage().	Eric Smith	More...				over 13 years ago
Check-in after initial release of 2.0.0-alpha SDK.	Eric Smith	More...				over 13 years ago
BigWig JAR was being built in the wrong place.	Eric Smith	More...				over 13 years ago

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