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Analyzed 5 months ago. based on code collected over 3 years ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Dec 18, 2019 — Dec 18, 2020 Showing page 11 of 56 Search / Filter on:
Updated to reflect newly added options.	jkbonfield	More...				over 15 years ago
New utility function "counter". Used for generating unique window names.	jkbonfield	More...				over 15 years ago
Split the GUI dialogue into separate template displays and reading depth plots.	jkbonfield	More...				over 15 years ago
Moved GetItemInfo from template_display.tcl (not used) to here.	jkbonfield	More...				over 15 years ago
bumped version to 1.11.6	jkbonfield	More...				over 15 years ago
* empty log message *	jkbonfield	More...				over 15 years ago
Bad case of missing braces!	jkbonfield	More...				over 15 years ago
Updated to accommodate illumina2srf version string change.	jkbonfield	More...				over 15 years ago
Merged in some of the changes made by Chris Saunders from Illumina.	jkbonfield	More...				over 15 years ago
Fixed an error with split file mode - it read past the end of an array.	jkbonfield	More...				over 15 years ago
New function srf_next_ztr_flags. This is the same as the old srf_next_ztr function except with the addition of an extra argument into which the SRF Data Block 'flags' value is copied when returning the next trace.	jkbonfield	More...				over 15 years ago
Added const to string params in ztr_add_text.	jkbonfield	More...				over 15 years ago
Merged in Steven Leonard's changes.	jkbonfield	More...				over 15 years ago
Bug fixed the qcal conversion - now use the correct lookup table and added .499 to match the rounding used in solexa2srf.c.	jkbonfield	More...				over 15 years ago
Added remove_extension() function. (Not yet used by io_lib, but potentially handy and used by some external tools.) (Steven Leonard)	jkbonfield	More...				over 15 years ago
Better error handling in tshift method	jkbonfield	More...				over 15 years ago
Fixed qcal output (-q option): - It now uses the region chunk to identify paired data if "-q 2" is used. - 64 is added back onto the values to turn them into printable (solexa style) fastq format. - It checks CNF1 meta-data to identify phred vs log-odds format data.	jkbonfield	More...				over 15 years ago
Added explicit PH scale to qcal CNF1 chunk.	jkbonfield	More...				over 15 years ago
Massaged version numbers in test data to match the new code. Ideally need a version-agnostic comparison mechanism.	jkbonfield	More...				over 15 years ago
Updates for 1.11.5	jkbonfield	More...				over 15 years ago
Bumped version to 1.11	jkbonfield	More...				over 15 years ago
Fixed qcal format so it now correctly drops quality by the 64 offset added in the fastq-a-like strings.	jkbonfield	More...				over 15 years ago
Fixed '%b' brief format (base call).	jkbonfield	More...				over 15 years ago
Modified the sequence_*_base() functions to take an extra argument named contig_orient. This controls whether we wish to make this change in the orientation that the sequence resides within the contig (requiring a bin traversal) or whether we already know and have taken that into account (such as from a former contig_seqs_in_range query).	jkbonfield	More...				over 15 years ago
Adjusted the positioning of contig offsets so that the offset is applied verbatim regardless of orientation of the root bin. The root bin's position element itself can be used to move contigs around (ie change the numbering start) instead of the contig start/end records.	jkbonfield	More...				over 15 years ago
More memory leak fixed (although tiny).	jkbonfield	More...				over 15 years ago
Removed some major memory leaks.	jkbonfield	More...				over 15 years ago
* empty log message *	jkbonfield	More...				over 15 years ago
sequence_get_position arg changes.	jkbonfield	More...				over 15 years ago
Added avg_sequence_depth prototype.	jkbonfield	More...				over 15 years ago

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