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Analyzed 4 months ago. based on code collected over 3 years ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Dec 18, 2019 — Dec 18, 2020 Showing page 7 of 56 Search / Filter on:
Total rewrite of the compute_ypos packing algorithm. This needs migrating back into tg_contig.c sometime. The new one uses a pair of splay trees and is massively faster than before.	jkbonfield	More...				about 15 years ago
* empty log message *	jkbonfield	More...				about 15 years ago
Copied from gap4 and tweaked. Needed to support zooming in the contig selector.	jkbonfield	More...				about 15 years ago
Small tweaks to make the depth plot work again (as I've been mainly focusing on the template display).	jkbonfield	More...				about 15 years ago
Update version to 0.13	jkbonfield	More...				about 15 years ago
Removal of memory leaks.	jkbonfield	More...				about 15 years ago
Added support for indexing bam format files (see samtools).	jkbonfield	More...				about 15 years ago
Removed the assumption of having a version code in database names.	jkbonfield	More...				about 15 years ago
Version number update.	jkbonfield	More...				about 15 years ago
Added cross-hairs	jkbonfield	More...				about 15 years ago
Experimented with different compute_ypos() functions. The new one I tried I ended up rejecting, but I doubled the speed of the existing implementation with a bit more optimisation.	jkbonfield	More...				about 15 years ago
Added a sequence depth and template depth line (optional). These need moving to their own raster or canvas, but for now they're functional rather than elegant.	jkbonfield	More...				about 15 years ago
Ripped out the old canvas based template display code.	jkbonfield	More...				about 15 years ago
Added a control to filter out single ended data.	jkbonfield	More...				about 15 years ago
Improvements to the template display:	jkbonfield	More...				about 15 years ago
Rewrote compute_ypos() to be faster. It's still not ideal though. I think it needs the combination of a linked list for fast resorting and an array for y scanning.	jkbonfield	More...				about 15 years ago
Fixed the same bug with mf_end and ztr_partial_decode from srf.c.	jkbonfield	More...				about 15 years ago
Bug fix to srf_next_ztr_flags. When faced with a ZTR header with no ZTR chunks in the srf data block header it erroneously set mf_end to zero instead of the actual length.	jkbonfield	More...				about 15 years ago
Changed uses of PlotRec to DPlotRec. This resolves a bug where having more Y coordinates needed than there are pixels will end up with data plotted in the same Y pixel. This is to be expected of course given resolution limits, but PlotRec allocated an integer position such that zooming in Y does not gain more resolution.	jkbonfield	More...				about 15 years ago
Added double versions of PlotRec and Line structs to support sub-pixel positioning. (Useful when zooming.)	jkbonfield	More...				about 15 years ago
Added code to read the newer maq-long format. This can be forced using tg_index -M, or is automatically attempted if maq -m fails.	jkbonfield	More...				about 15 years ago
Added a red colour for templates that have read-pairs in inconsistent orientations.	jkbonfield	More...				about 15 years ago
Allow for the old canvas based template display to still be viewed, so we can do mouse-overs etc. This is a temporary hack to get a usable interface, but ultimately I'll probably end up rewriting the raster method to be a canvas object so it can be combined with canvas overlays and fits in with the rest of the window.	jkbonfield	More...				about 15 years ago
Major overhaul to use raster widget instead and the new template_display.c C code. The old canvas widget code is still there intact, albeit not reachable right now.	jkbonfield	More...				about 15 years ago
Missing bracket? How did it work before.	jkbonfield	More...				about 15 years ago
Changes due to sequence_get_position API change.	jkbonfield	More...				about 15 years ago
Added call to TDisp_Init to register template display additions.	jkbonfield	More...				about 15 years ago
Better error checking when given invalid DB to open.	jkbonfield	More...				about 15 years ago
Changes to sequence_get_position API.	jkbonfield	More...				about 15 years ago
Added template_display.o	jkbonfield	More...				about 15 years ago

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