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Analyzed 4 months ago. based on code collected over 3 years ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Dec 18, 2019 — Dec 18, 2020 Showing page 55 of 56 Search / Filter on:
Scrolling down sequences when the Y-depth was too high would position the cursor on a sequence underneath the consensus line without Y scrolling the editor window properly.	jkb	More...				almost 21 years ago
Remove buffer overflow. (Index using 1-N on an array alloc of N.)	jkb	More...				almost 21 years ago
New function with a binding "Edit contig at tag pos" menu. Right clicking in a tag in the contig selector now allows the editor to be brought up at that position.	jkb	More...				almost 21 years ago
Set -tearoffs 0 on cascading edit tag and delete tag menus.	jkb	More...				almost 21 years ago
Deleted the out dated distviewer* targets.	jkb	More...				almost 21 years ago
New script to parse 'stops' program output and add STOP tags.	jkb	More...				almost 21 years ago
Tweaked the default parameters to use a longer window length and fixed a bug in identifying stops to skip.	jkb	More...				almost 21 years ago
* empty log message *	jkb	More...				almost 21 years ago
Use gcc-3.2 as gcc-3.0.3 generates buggy code on the alpha with -O2.	jkb	More...				almost 21 years ago
Put back the Any-Configure binding as it appears to be necessary on neons.	jkb	More...				almost 21 years ago
Document N-clip and edit/delete tag cascading menus.	jkb	More...				almost 21 years ago
Added code to keep track of when a 'virtual sequence' overlaps another virtual sequence. If more than 2/3rds of it does then we start applying a penalty. This is designed to filter out the cases where repeating a primer-walk just a few bases further along solves a few more bases.	jkb	More...				almost 21 years ago
When generating consensus for primer3 we now check the dust-filtering so as not to pick primers from low sequence. These were filtered out later, but it's faster to prefilter.	jkb	More...				almost 21 years ago
Tweaks the dust window from 64 to 48 and adjusted the dust score accordingly.	jkb	More...				almost 21 years ago
Added a clip sequence by %age of non-ACGT (labelled N-clip). This solves a phrap alignment bug.	jkb	More...				almost 21 years ago
* empty log message *	jkb	More...				almost 21 years ago
First version of the 'stop' detector. At present it just outputs the info to stdout.	jkb	More...				almost 21 years ago
Fixed a bug with loading tag macros from .gaprc.	jkb	More...				almost 21 years ago
Added a clip sequence by %age of non-ACGT (labelled N-clip). This solves a phrap alignment bug.	jkb	More...				almost 21 years ago
Replace the trace-flash window to cover the whole height of the trace instead of +40 onwards. (+40 was inappropriate after we moved the base calls from the top to the bottom of the trace.)	jkb	More...				almost 21 years ago
Added 'break' to F10 binding so that the global keyboard menu traversal bindings do trigger.	jkb	More...				almost 21 years ago
The Edit Tag and Delete tag editor commands are now cascading menus containing the list of all tags underneath the editing cursor. These lists are updated even if the menus have been torn off and after undo, etc.	jkb	More...				almost 21 years ago
* empty log message *	jkb	More...				almost 21 years ago
removing debugging output	jkb	More...				almost 21 years ago
new docs	jkb	More...				almost 21 years ago
added new docs, renamed some others	jkb	More...				almost 21 years ago
* empty log message *	jkb	More...				almost 21 years ago
more putting-into-cvs updates	jkb	More...				almost 21 years ago
Fix .links code.	jkb	More...				almost 21 years ago
tidying up cvs creation	jkb	More...				almost 21 years ago

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