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BioPerl

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  Analyzed about 1 month ago

Bioperl is a large, object-oriented toolkit of interacting perl modules useful for building bioinformatics solutions in Perl. The collection of modules in the bioperl-live repository contains the core functionality. Additional packages for creating graphical interfaces (bioperl-gui), setting up persistent ORM storage in RDMBS (bioperl-... [More]

384K lines of code

16 current contributors

3 months since last commit

23 users on Open Hub

Activity Not Available
4.22222
   

Jmol

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  Analyzed 6 days ago

Jmol is a Java molecular viewer for three-dimensional chemical structures. Features include reading a variety of file types and output from quantum chemistry programs, and animation of multi-frame files and computed normal modes from quantum programs.

498K lines of code

4 current contributors

3 months since last commit

13 users on Open Hub

Moderate Activity
4.0
   

BioJava

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  Analyzed about 1 month ago

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It include objects for manipulating biological sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and powerful analysis and statistical routines i... [More]

312K lines of code

21 current contributors

4 months since last commit

13 users on Open Hub

Activity Not Available
4.5
   

Biopython

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  Analyzed 4 months ago

Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biop... [More]

283K lines of code

30 current contributors

4 months since last commit

12 users on Open Hub

Activity Not Available
4.66667
   

SHOGUN

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  Analyzed about 1 month ago

The SHOGUN machine learning toolbox's focus is on large scale kernel methods and especially on Support Vector Machines (SVM). It comes with a generic interface for SVMs, features several SVM and kernel implementations, includes LinAdd optimizations and also Multiple Kernel Learning algorithms. SHOGUN also implements a number of lin... [More]

757K lines of code

37 current contributors

3 months since last commit

11 users on Open Hub

Activity Not Available
5.0
 

SeqAn

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  Analyzed 4 months ago

Seqan is a C++ template library of efficient data structures and algorithms for sequence analysis.

917K lines of code

15 current contributors

5 months since last commit

11 users on Open Hub

Activity Not Available
5.0
 

Bioconductor

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  Analyzed over 3 years ago

Bioconductor is an open source and open development software project for the analysis and comprehension of genomic data. The project was started in the Fall of 2001. The Bioconductor core team is based primarily at the Fred Hutchinson Cancer Research Center. Other members come from various US and international institutions.

2.01M lines of code

0 current contributors

Over 7 years since last commit

8 users on Open Hub

Activity Not Available
5.0
 
Licenses: No declared licenses

The Chemistry Development Kit

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  Analyzed almost 2 years ago

The Chemistry Development Kit (CDK) is a library of Java classes for chemo-, bioinformatics, computational chemistry, and chemometrics. It provides important algorithms like substructure search, SMILES, Gasteiger charges, QSAR descriptor calculation, 3D structure generation, 2D layout and rendering, many IO formats, atom typing, and more.

908K lines of code

11 current contributors

Almost 2 years since last commit

6 users on Open Hub

Activity Not Available
4.33333
   

Bioclipse

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  Analyzed almost 4 years ago

The Bioclipse project is aimed at creating a Java-based, open source, visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP). Bioclipse, as any RCP application, is based on a plugin architecture that inherits basic functionality and visual interfaces from Eclipse, such as help system, software upd... [More]

1.13M lines of code

12 current contributors

Almost 4 years since last commit

5 users on Open Hub

Activity Not Available
4.66667
   

Cytoscape

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  Analyzed 19 days ago

Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data.

9.65M lines of code

19 current contributors

6 months since last commit

5 users on Open Hub

Moderate Activity
5.0