Tags : Browse Projects

Select a tag to browse associated projects and drill deeper into the tag cloud.

BioPerl

Compare

  Analyzed 5 months ago

Bioperl is a large, object-oriented toolkit of interacting perl modules useful for building bioinformatics solutions in Perl. The collection of modules in the bioperl-live repository contains the core functionality. Additional packages for creating graphical interfaces (bioperl-gui), setting up ... [More] persistent ORM storage in RDMBS (bioperl-db), running and parsing the results from hundreds of bioinformatics applications (bioperl-run), and software to automate bioinformatic analyses (bioperl-pipeline) are all available from our Subversion repository. [Less]

275K lines of code

9 current contributors

8 months since last commit

22 users on Open Hub

Activity Not Available
4.22222
   
I Use This

BioJava

Compare

  Analyzed about 10 hours ago

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It include objects for manipulating biological sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and ... [More] powerful analysis and statistical routines including a dynamic programming toolkit. BioJava is used in several real-world bioinformatics applications and has been used for bioinformatics analysis in a number of published studies. [Less]

1.06M lines of code

13 current contributors

20 days since last commit

14 users on Open Hub

Moderate Activity
4.5
   
I Use This

Avogadro

Compare

  Analyzed 1 day ago

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible rendering and a powerful plugin architecture.

171K lines of code

0 current contributors

almost 3 years since last commit

13 users on Open Hub

Inactive
4.85714
   
I Use This

Jmol

Compare

  Analyzed 10 days ago

Jmol is a Java molecular viewer for three-dimensional chemical structures. Features include reading a variety of file types and output from quantum chemistry programs, and animation of multi-frame files and computed normal modes from quantum programs.

596K lines of code

0 current contributors

29 days since last commit

12 users on Open Hub

Moderate Activity
4.0
   
I Use This

The Chemistry Development Kit

Compare

  Analyzed over 1 year ago

The Chemistry Development Kit (CDK) is a library of Java classes for chemo-, bioinformatics, computational chemistry, and chemometrics. It provides important algorithms like substructure search, SMILES, Gasteiger charges, QSAR descriptor calculation, 3D structure generation, 2D layout and rendering, many IO formats, atom typing, and more.

560K lines of code

10 current contributors

over 1 year since last commit

6 users on Open Hub

Activity Not Available
4.33333
   
I Use This

JChemPaint Applet and Swing Application

Compare

  Analyzed over 1 year ago

JChemPaint is a program for drawing 2D chemical structures like those found in most chemistry textbooks.

63.3K lines of code

0 current contributors

almost 15 years since last commit

5 users on Open Hub

Activity Not Available
4.0
   
I Use This

PathVisio

Compare

  Analyzed over 1 year ago

Utility for creating / edit biological pathways and and visualizing high-throughput data (e.g. microarray data) in the context of pathways.

0 lines of code

0 current contributors

0 since last commit

4 users on Open Hub

Activity Not Available
0.0
 
I Use This
Mostly written in language not available
Licenses: apache_2

Ontologizer

Compare

  Analyzed over 1 year ago

Ontologizer is an Open Source tool with the purpose of identifying enriched Gene Ontology terms in lists of names of genes or gene products.

0 lines of code

0 current contributors

0 since last commit

4 users on Open Hub

Activity Not Available
5.0
 
I Use This
Mostly written in language not available
Licenses: bsd_2clau..., gpl

GenoViz

Compare

  Analyzed 2 days ago

The GenoViz project provides tools for genomics data visualization. It consists of the following: 1) the GenoViz SDK, a library of re-usable components, 2) the Genometry data model to represent relationships between biological sequences, and 3) the Integrated Genome Browser (IGB, "igbee"), an ... [More] application built upon the GenoViz SDK and Genometry for visualization and exploration of genomes and corresponding annotations from multiple data sources. IGB supports the Distributed Annotation System (DAS) protocol, version 1 and 2, as well as other optimized binary data formats that are designed for efficient exploration of large, whole genome data sets. [Less]

192K lines of code

35 current contributors

3 days since last commit

4 users on Open Hub

Moderate Activity
5.0
 
I Use This

JOELib

Compare

  Analyzed over 1 year ago

JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.

187K lines of code

0 current contributors

about 14 years since last commit

3 users on Open Hub

Activity Not Available
4.5
   
I Use This