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Analyzed about 14 hours ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
May 21, 2023 — May 21, 2024 Showing page 42 of 50 Search / Filter on:
High level script to re-process previous samples	Brad Chapman	More...				over 13 years ago
Add hook to eliminate short name if desired	Brad Chapman	More...				over 13 years ago
Generalize wild card for finding illumina output directories	Brad Chapman	More...				over 13 years ago
Update example configuration files for post-processing	Brad Chapman	More...				over 13 years ago
Merge branch 'master' of http://github.com/chapmanb/bcbb into experimental	Roman Valls Guimerà	More...				over 13 years ago
Update analysis pipeline for latest GATK release	Brad Chapman	More...				over 13 years ago
Updates to R packages for installation	Brad Chapman	More...				over 13 years ago
Provide Broad sorted hg18 reference for compatibility with GATK tools	Brad Chapman	More...				over 13 years ago
Merge branch 'master' of http://github.com/chapmanb/bcbb into experimental	Roman Valls Guimerà	More...				over 13 years ago
Show error plots only in pdf output	Brad Chapman	More...				over 13 years ago
Add solexaQA graphs to summary reports	Brad Chapman	More...				over 13 years ago
Testing with open Eucalyptus cloud ... (no ramdisk or kernel images allowed)	Roman Valls Guimerà	More...				over 13 years ago
Merge branch 'master' of http://github.com/chapmanb/bcbb	Roman Valls Guimerà	More...				over 13 years ago
Create target directories if missing when copying fastq files	Brad Chapman	More...				over 13 years ago
Handle case with read pair on non-passed through chromosome	Brad Chapman	More...				over 13 years ago
Merge branch 'master' of github.com:chapmanb/bcbb	Brad Chapman	More...				over 13 years ago
Allow resorting of BAMs based on an input reference dictionary to match	Brad Chapman	More...				over 13 years ago
New CloudBioLinux AMI with some additional python packages and updated next gen libraries	Brad Chapman	More...				over 13 years ago
Utility to resort a BAM file karyotipicially to match GATKs preferred ordering	Brad Chapman	More...				over 13 years ago
Option to write non-passing qseq reads to separate fastq files	Brad Chapman	More...				over 13 years ago
Remove old code workflow for simplicity	Brad Chapman	More...				over 13 years ago
Provide server for transferring read images to storage in addition to processing	Brad Chapman	More...				over 13 years ago
Provide server for transferring read images to storage in addition to processing	Brad Chapman	More...				over 13 years ago
Directly pass tile directories for copying	Brad Chapman	More...				over 13 years ago
Directly pass tile directories for copying	Brad Chapman	More...				over 13 years ago
Working version of illumina transfer with fastq on machine	Brad Chapman	More...				over 13 years ago
Transfer images by lane	Brad Chapman	More...				over 13 years ago
Working version of illumina transfer with fastq on machine	Brad Chapman	More...				over 13 years ago
Move fastq processing to sequencing directory, transferring after	Brad Chapman	More...				over 13 years ago
Clean up markdown syntax	Brad Chapman	More...				over 13 years ago

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