B

bcbb

Settings | Report Duplicate

0

I Use This!

Very Low Activity

Commits : Listings

Analyzed 2 days ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
May 13, 2023 — May 13, 2024 Showing page 43 of 50 Search / Filter on:
Clean up markdown syntax	Brad Chapman	More...				over 13 years ago
Reorganize and initial documentation for distributed BLAST analysis	Brad Chapman	More...				over 13 years ago
Additional packages and small modifications after testing on EC2	Brad Chapman	More...				over 13 years ago
Hadoop inputs and outputs now match multiprocessing script	Brad Chapman	More...				over 13 years ago
Merge branch 'master' of github.com:chapmanb/bcbb	Brad Chapman	More...				over 13 years ago
Refactor cross organism code for work on hadoop and multiprocessing	Brad Chapman	More...				over 13 years ago
Script to rename samples removing colons and spaces	Brad Chapman	More...				over 13 years ago
Merge branch 'master' of github.com:chapmanb/bcbb	Brad Chapman	More...				over 13 years ago
Generalize cross organism BLAST code	Brad Chapman	More...				over 13 years ago
Script reorganization	Brad Chapman	More...				over 13 years ago
Generalize phylogeny BLAST for distributed access	Brad Chapman	More...				over 13 years ago
Clean up hadoop code and use tempfiles to safely handle parallel processes	Brad Chapman	More...				over 13 years ago
Update to latest AMI	Brad Chapman	More...				over 13 years ago
Add pydoop installation for Hadoop access from Python	Brad Chapman	More...				over 13 years ago
Add in new freenx setup scripts which ease setting password via ssh	Brad Chapman	More...				over 13 years ago
Add in new freenx setup scripts which ease setting password via ssh	Brad Chapman	More...				over 13 years ago
Merge branch 'master' of github.com:chapmanb/bcbb	Brad Chapman	More...				over 13 years ago
Distributed BLAST with Hadoop; simple job splitting by FASTA records	Brad Chapman	More...				over 13 years ago
More flexible arguments for BAM to wiggle	Brad Chapman	More...				over 13 years ago
Example script for converting GFF to GenBank	Brad Chapman	More...				over 13 years ago
Provide automated coverage files as BigWig, uploaded to Galaxy	Brad Chapman	More...				over 13 years ago
Merge branch 'master' of github.com:chapmanb/bcbb	Brad Chapman	More...				over 13 years ago
Update link to tutorial	Brad Chapman	More...				over 13 years ago
Update coverage sampling argument to match latest version of GATK	Brad Chapman	More...				over 13 years ago
Update output file commands for unified genotyper to match GATK changes	Brad Chapman	More...				over 13 years ago
Use local tempdirs to avoid /tmp memory issues; use check_call to exit on errors	Brad Chapman	More...				over 13 years ago
Update indel realignment to work with latest changes to GATK for mate pair resolution	Brad Chapman	More...				over 13 years ago
Merge branch 'master' of http://github.com/chapmanb/bcbb	Roman Valls Guimerà	More...				over 13 years ago
Add logo to web page plus Bio-Linux reference	Brad Chapman	More...				over 13 years ago
Initial move of next gen automated analysis into git revision control	Brad Chapman	More...				over 13 years ago

←
1
2
…
39
40
41
42
43
44
45
46
47
48
49
50
→