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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 16, 2024 — Aug 16, 2025 Showing page 94 of 114 Search / Filter on:
Merge branch 'bcftools+calling' into develop	Petr Danecek	More...				almost 12 years ago
vcf module: Made the naming more consistent to avoid confusion about which of the vcf/bcf_* function variant to use.	Petr Danecek	More...				almost 12 years ago
vcf: Tidied up vcf.h, made API more consistent and extended documentation	Petr Danecek	More...				almost 12 years ago
synced_reader: Fixed an off by one error in bcf_sr_next_line() to properly match target alleles	Petr Danecek	More...				almost 12 years ago
vcf.c: Call bcf_unpack() on user's behalf in all bcf1_get/update routines	Petr Danecek	More...				almost 12 years ago
Disentangle CRAM header loopiness [minor]	John Marshall	More...				almost 12 years ago
vcf.h: New API call: bcf_get_genotypes()	Petr Danecek	More...				almost 12 years ago
vcf.h: Add out of range check into bcf_idinfo_exists() as it always has to be checked elsewhere.	Petr Danecek	More...				almost 12 years ago
New feature in bcf_synced_reader: negate the sample selection in bcf_sr_set_samples by exclamation mark	Petr Danecek	More...				almost 12 years ago
vcf.c: Proper freeing of memory taken by dirty info/fmt tags when update routine called multiple times	Petr Danecek	More...				almost 12 years ago
Add bam_endpos(const bam1_t *)	John Marshall	More...				almost 12 years ago
Add iRODS hFILE backend	John Marshall	More...				almost 12 years ago
Fixed a rather surprising bug in CSI index access via hts_itr_next, before it was not possible to obtain BCF record at chr:pos-pos. The fix may have unexpected consequences in other situations and file formats, beware!	Petr Danecek	More...				almost 12 years ago
Remove -Wc++-compat for the sake of the CRAM code	John Marshall	More...				almost 12 years ago
bcf_index_build: Check if the BCF is compressed	Petr Danecek	More...				almost 12 years ago
Proper initialization in hts_readlines	Petr Danecek	More...				almost 12 years ago
Merge branch 'cram' into develop	John Marshall	More...				almost 12 years ago
vcf: Added bcf_get_variant_type[s]() call to avoid the need for explicit call of bcf_set_variant_types(); The mpileup's X allele is not a SNP; Get rid of htfile warnings	Petr Danecek	More...				almost 12 years ago
synced_reader: Added support for alleles in targets files to select best matching line out of possibly duplicate VCF records.	Petr Danecek	More...				almost 12 years ago
(io_lib r3470) Fixed re-calling refs2id so it clears cached r->last; the pointer becomes invalid.	James Bonfield	More...				almost 12 years ago
Enable warnings only if -Wno-unused-result works	John Marshall	More...				almost 12 years ago
Build test_view with -pthread	John Marshall	More...				almost 12 years ago
Merge the CRAM test harness into current htslib	John Marshall	More...				almost 12 years ago
Add makefile dependencies for cram code	John Marshall	More...				almost 12 years ago
Move cram/ directory to the top-level	John Marshall	More...				almost 12 years ago
Merge branch develop of github.com/jkbonfield/htslib into cram	John Marshall	More...				almost 12 years ago
Silenced a "pointer targets in initialization differ in signedness" warning.	James Bonfield	More...				almost 12 years ago
(io_lib r3467)	James Bonfield	More...				almost 12 years ago
(io_lib r3461 minus arithmetic coder & last_name experimental parts)	James Bonfield	More...				almost 12 years ago
(io_lib r3460)	James Bonfield	More...				almost 12 years ago

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