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Analyzed 2 days ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 20, 2024 — Aug 20, 2025 Showing page 98 of 114 Search / Filter on:
Merge branch 'develop' of https://github.com/samtools/htslib into develop	James Bonfield	More...				about 12 years ago
Major overhaul of CRAM code (originally imported from Samtools/htlib branch, and further back from Staden Package io_lib).	James Bonfield	More...				about 12 years ago
Merged with attractivechaos/klib: - add upstream kvsprintf and rework ksprintf - add upstream printf attribute checks - use our kputw (has MIN_INT bug fix) - keep our extra functions (kputc_, kputsn_, kputl)	James Bonfield	More...				about 12 years ago
Remaining application code also moving repository	John Marshall	More...				about 12 years ago
Deleted files which were moved to the new samtools/bcftools.git repository	Petr Danecek	More...				about 12 years ago
Merge branch 'develop' of github.com:samtools/htslib into develop	Petr Danecek	More...				about 12 years ago
vcfcheck: re-enabled stats by QUAL	Petr Danecek	More...				about 12 years ago
Test with both Clang and GCC	John Marshall	More...				about 12 years ago
Build shared libraries, add "make install" target	John Marshall	More...				about 12 years ago
New non-recursive build infrastructure	John Marshall	More...				about 12 years ago
Added CRAM support to htslib and htscmd samview. This is just a port over from the samtools io_lib subdirectory and has all the same nasties and duplication of abstract data types.	James Bonfield	More...				about 12 years ago
Lift library source to the top-level directory	John Marshall	More...				about 12 years ago
Move format specifications to sam-spec repository	John Marshall	More...				about 12 years ago
Merge remote branch 'remotes/sm15-mod/develop' into develop	Petr Danecek	More...				about 12 years ago
vcfsubset: Make --apply-filters consistent with other tools	Petr Danecek	More...				about 12 years ago
Resolved vcfmerge.c merge conflict	Petr Danecek	More...				about 12 years ago
vcf core lib, vcfsubset, vcfmerge: First step towards binary BCF output. Functional but probably buggy.	Petr Danecek	More...				about 12 years ago
Merge branch 'master' into develop	John Marshall	More...				about 12 years ago
Add Travis CI control file	John Marshall	More...				about 12 years ago
Merge branch 'razf_sync' of https://github.com/mp15/htslib into develop	John Marshall	More...				about 12 years ago
Merge branch 'for-samtools' into develop	John Marshall	More...				about 12 years ago
vcffilter: Change in neighbourhood function in SOM training, seems more robust with respect to random seed	Petr Danecek	More...				about 12 years ago
Avoid conflicting with samtools's bam_index()	John Marshall	More...				about 12 years ago
Expose bam_hdr_init() in the public API header	John Marshall	More...				about 12 years ago
vcfnorm: Removed two assertions to allow realignment of MNPs	Petr Danecek	More...				about 12 years ago
vcfcheck: Fixed a bug in initialization of frame-shift calculation; More detailed FS output	Petr Danecek	More...				about 12 years ago
vcffilter: FILTER column of hard-filtered sites now lists failed filters; Unset the FILTER of skipped sites only with -u switch, not by default.	Petr Danecek	More...				about 12 years ago
Use htslib's bgzf.h, faidx.h, and razf.h	John Marshall	More...				about 12 years ago
Maintain the same API regardless of -D BGZF_MT	John Marshall	More...				about 12 years ago
synced read and vcftools: Changed the -f, --apply-filters switch so that it accepts a list of allowed FILTERs. This is useful for example in cases when PASS has to be distinguished from "."	Petr Danecek	More...				about 12 years ago

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