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Analyzed 2 days ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 27, 2024 — Aug 27, 2025 Showing page 97 of 114 Search / Filter on:
Use static inline, not just inline	John Marshall	More...				about 12 years ago
Fix union-based type-punning buglet	John Marshall	More...				about 12 years ago
vcf.h: Reverted back to bcf_float_is_* macros as the inlined unions break vcfmerge code, found a solution with the original version.	Petr Danecek	More...				about 12 years ago
Resolved merge conflict in Makefile, merged.	Petr Danecek	More...				about 12 years ago
[hts_open,bgzf,vcf] New flags for uncompressed input/output to distinguish between compressed/uncompressed BCF/VCF. Updates and fixes in BCF update functions. Removed old tests (now in samtools/bcftools repo) and added new.	Petr Danecek	More...				about 12 years ago
Actually $(NUMERIC_VERSION) is more generic	John Marshall	More...				about 12 years ago
Replace HTS_VERSION with hts_version()	John Marshall	More...				about 12 years ago
Use config.h for configuration options	John Marshall	More...				about 12 years ago
Use strtoul() for other unsigned 'B' types too	John Marshall	More...				about 12 years ago
Bug fix to handle blank headers in SAM files	John Marshall	More...				about 12 years ago
constify input parameter to faidx_fetch_seq	jsimpson	More...				about 12 years ago
Update kstring.[ch] from upstream sources	John Marshall	More...				about 12 years ago
Added tests/test_view	James Bonfield	More...				about 12 years ago
tview and bgzip: Check that the files are bgzipped, not gzipped.	Petr Danecek	More...				about 12 years ago
bgzf.c: Check return status of bgzf_read_block in bgzf_useek to catch gzipped (as opposed to bgzipped) files.	Petr Danecek	More...				about 12 years ago
Added BGZF indexing and reindexing capability to bgzip. Fixed -b seeking.	Petr Danecek	More...				about 12 years ago
New API for BGZF indexing w.r.t uncompressed data. Extended BGZF to read uncompressed files. Moved from RAZF to BGZF in FAI indexing.	Petr Danecek	More...				about 12 years ago
Update khash.h from upstream sources	John Marshall	More...				about 12 years ago
Bug fix to khashification of process_one_read.	James Bonfield	More...				about 12 years ago
Added some synthetic SAM test data and a test perl script to trial conversion between SAM, BAM and CRAM. A work in progress.	James Bonfield	More...				about 12 years ago
A bit of a hack to set the header and references up properly for cram. This is a hack right now as it requires accessing internals of the fp, but it should be fixed in future by properly supporting methods to manipulate these fields for all data types rather than just cram (eg see scram.c in io_lib).	James Bonfield	More...				about 12 years ago
Bug fix to khash-ification of sam_hdr_add_lines	James Bonfield	More...				about 12 years ago
Better handling of unknown references.	James Bonfield	More...				about 12 years ago
Use strtoul instead of strtol for XX:B:I tags so that integers >2.14 billion work.	James Bonfield	More...				about 12 years ago
Use strtoul instead of strtol for XX:B:I tags so that integers >2.14 billion work.	James Bonfield	More...				about 12 years ago
Bug fix to stop sam view from converting 'H' into 'Z' types.	James Bonfield	More...				about 12 years ago
Bug fix to stop sam view from converting 'H' into 'Z' types.	James Bonfield	More...				about 12 years ago
Bug fix to handle blank headers in SAM files.	James Bonfield	More...				about 12 years ago
Switch from modifying CFLAGS to CPPFLAGS so we can do "make CFLAGS=-g".	James Bonfield	More...				about 12 years ago
Further removal of various unusued portions of Staden io_lib.	James Bonfield	More...				about 12 years ago

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