| minor fix for self comparison in read_blast() |
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about 13 years ago
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| enhance algorithms.synteny.mcscan() to select the best pair within each block |
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about 13 years ago
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| algorithms.synteny.liftover now recruits extra pairs directly to each block |
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about 13 years ago
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| add algorithms.synteny.summary() and stats() |
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about 13 years ago
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| add option --ids to assembly.geneticmap |
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about 13 years ago
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| add formats.fasta.ispcr() to format isPcr input |
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about 13 years ago
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| fix bug in assembly.patch.install() |
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about 13 years ago
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| add assembly.geneticmap.header() |
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about 13 years ago
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| update README for external programs |
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about 13 years ago
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| add assembly.geneticmap.rename() to rename markers to new assembly |
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about 13 years ago
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| fix minor bug in graphics.dotplot |
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about 13 years ago
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| fix bug in assembly.patch.closest() |
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about 13 years ago
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| add assembly.patch.eject() to remove components from assembly |
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about 13 years ago
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| add assembly.patch.insert() to insert unplaced scaffolds back into assembly |
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about 13 years ago
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| fix math in assembly.patch.bambus() |
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about 13 years ago
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| do not write pairs.bed in assembly.patch.bambus() |
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about 13 years ago
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| add utils.range.ranges_depth() to calculate depth along a list of intervals |
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about 13 years ago
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| add assembly.patch.bambus() to insert unplaced scaffolds into chr |
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about 13 years ago
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| add assembly.geneticmap.fasta() to extract SNP markers |
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about 13 years ago
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| add assembly.patch.tips() |
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about 13 years ago
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| add option --prefix and --strict to assembly.patch.install() |
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about 13 years ago
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| replace sequence ranges in assembly.patch.install() |
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about 13 years ago
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| parse blastfile instead of bedfile in assembly.patch.install() |
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about 13 years ago
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| add formats.agp.frombed() to build AGP file from bed intervals |
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about 13 years ago
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| add formats.bed.uniq() to remove overlapping features |
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about 13 years ago
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| add assembly.patch.install() |
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about 13 years ago
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| add assembly.patch.fill for gap filling; allow --wordsize for BLAST wrapper |
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about 13 years ago
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| add assembly.patch.install() |
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about 13 years ago
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| add formats.coords.blast() |
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about 13 years ago
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| add assembly.geneticmap |
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about 13 years ago
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