Open Hub
Open Hub

 Settings |  Report Duplicate

1
I Use This!
Low Activity

Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.
Jul 16, 2024 — Jul 16, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
regular
Jingping Li
More... over 13 years ago
if chromosome, start the gene number at the gap_increment
tanghaibao
as Haibao Tang
More... over 13 years ago
add annotation.reformat.rename()
tanghaibao
as Haibao Tang
More... over 13 years ago
simple fix in the logic of jcvi.formats.fasta.format()
vivekkrish
as Vivek Krishnakumar
More... over 13 years ago
minor fix in formats.fasta.format()
tanghaibao
as Haibao Tang
More... over 13 years ago
Added new option to jcvi.formats.fasta.format() to be able to insert Functional annotation into the FASTA header from a two-column 'ID <--> Annotation' mapping file.
vivekkrish
as Vivek Krishnakumar
More... over 13 years ago
give stats about the seqs that cannot translate in formats.fasta.translate()
tanghaibao
as Haibao Tang
More... over 13 years ago
add apps.base.timestamp() to record timestamps and apps.base.touch() to recover
tanghaibao
as Haibao Tang
More... over 13 years ago
print stats on results of GapCloser's .fill file
tanghaibao
as Haibao Tang
More... over 13 years ago
add formats.base.truncate() to remove lines in-place from huge files
tanghaibao
as Haibao Tang
More... over 13 years ago
allow grid.run() to use multiple threads
tanghaibao
as Haibao Tang
More... over 13 years ago
allow fastq.convert() to run on grid
tanghaibao
as Haibao Tang
More... over 13 years ago
check if reads already loaded in run.sh generated by assembly.allpaths.prepare()
tanghaibao
as Haibao Tang
More... over 13 years ago
split paired fastq with grid option
tanghaibao
as Haibao Tang
More... over 13 years ago
grid run now accept pipes
tanghaibao
as Haibao Tang
More... over 13 years ago
minor default value changes
tanghaibao
as Haibao Tang
More... over 13 years ago
add utils.cbook.timeit decorator
tanghaibao
as Haibao Tang
More... over 13 years ago
compatibility check in agp v2.0
tanghaibao
as Haibao Tang
More... over 13 years ago
add more descriptive text to formats.chain.summary()
tanghaibao
as Haibao Tang
More... over 13 years ago
simplify formats.fasta.summary()
tanghaibao
as Haibao Tang
More... over 13 years ago
provide summary for chain file; add option --params to apps.last()
tanghaibao
as Haibao Tang
More... over 13 years ago
default case insensitive in apps.last
tanghaibao
as Haibao Tang
More... over 13 years ago
bug fix in fasta.join() when no .oo file is given
tanghaibao
as Haibao Tang
More... over 13 years ago
revert to --format=general since --format=BLASTN- seems to be buggy
tanghaibao
as Haibao Tang
More... over 13 years ago
parallel LAST to run on multiple CPUs
tanghaibao
as Haibao Tang
More... over 13 years ago
make last.py and lastz.py interface similar
tanghaibao
as Haibao Tang
More... over 13 years ago
add Python version of MCSCAN (Tang et al. Genome Research, 2008) to algorithm.synteny.mcscan()
tanghaibao
as Haibao Tang
More... over 13 years ago
move annotation.reformat.rename() to formats.gff
tanghaibao
as Haibao Tang
More... over 13 years ago
add formats.gff.format() option --gsac; formats.gff.load() option --attribute;
tanghaibao
as Haibao Tang
More... over 13 years ago
add support for "conserved hypothetical protein"
tanghaibao
as Haibao Tang
More... over 13 years ago