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Low Activity
Commits
: Listings
Analyzed
about 24 hours
ago. based on code collected
about 24 hours
ago.
Jul 21, 2024 — Jul 21, 2025
Showing page 43 of 351
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Code Location
Date
Add an option to dump the Fibonacci numbers.
Brian P. Walenz
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over 6 years ago
Remove now extremely out-of-date documentation on running commands in canu.
Brian P. Walenz
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over 6 years ago
Remove now extremely out-of-date documentation on correcting reads.
Brian P. Walenz
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over 6 years ago
Remove a hack to make alignGFA work both on and off grid when under PBS control.
Brian P. Walenz
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over 6 years ago
Add -haplotype option to usage output.
Brian P. Walenz
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over 6 years ago
Add option -haplotype to stop after haplotype-specific reads are generated, and before assemblies are started. Issue #1140.
Brian P. Walenz
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over 6 years ago
Fix stopAfter correction and trimming so they stop after the FASTA is generated. Update docs too.
Brian P. Walenz
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over 6 years ago
Fix test if bogart has previously finished so it works with object stores.
Brian P. Walenz
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over 6 years ago
Remove old and now incorrect comment.
Brian P. Walenz
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over 6 years ago
Add command line usage for TrioCanu.
Brian P. Walenz
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over 6 years ago
Configure threads for cor and cns, even though memory is configured later.
Brian P. Walenz
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over 6 years ago
Add option 'minimap' to set the path to 'minimap2'. By default, use the one in your path.
Brian P. Walenz
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over 6 years ago
Don't try to run meryl for minimap. Issue #1132.
Brian P. Walenz
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over 6 years ago
Fix integer overflow - 64 bits! - when trying to pick parameters for 32-mers.
Brian P. Walenz
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over 6 years ago
Fix, maybe, failures running grid tasks directly when using PBS. Issue #1138.
Brian P. Walenz
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over 6 years ago
Add multi-set capability to operations.
Brian P. Walenz
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over 6 years ago
Add an importer for meryl. Changes merylCountArray, which is used for normal meryl counting.
Brian P. Walenz
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over 6 years ago
Rename private member _width to _sWidth.
Brian P. Walenz
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over 6 years ago
Add Elias Gamma, Elias Delta, and Zeckendorf codings.
Brian P. Walenz
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over 6 years ago
Rename the logBaseTwo() functions to countNumberOfBits() since that's what they were really doing.
Brian P. Walenz
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over 6 years ago
Return the size of the variable-length encoded data when it is added.
Brian P. Walenz
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over 6 years ago
Add an error message, fix a log message.
Brian P. Walenz
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over 6 years ago
Trivial change of variable name 'value' to 'suffix'.
Brian P. Walenz
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over 6 years ago
Trivial change of variable name 'value' to 'suffix'.
Brian P. Walenz
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over 6 years ago
Add a version 2 merylIndex format. But don't use it yet.
Brian P. Walenz
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over 6 years ago
Update faq.rst
Sergey Koren
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over 6 years ago
Merge branch 'master' of github.com:marbl/canu
Sergey Koren
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over 6 years ago
Ignore lines with dashes to avoid warning and dont default to kb for mem units, get them from the lshosts output
Sergey Koren
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over 6 years ago
Add a useful utility to lookup kmers in meryl databases.
Brian P. Walenz
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over 6 years ago
Add kmerIterator(), update splitHaplotypes and meryl to use it to generate kmers.
Brian P. Walenz
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over 6 years ago
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