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Commits : Listings

Analyzed about 24 hours ago. based on code collected about 24 hours ago.
Jul 21, 2024 — Jul 21, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Add an option to dump the Fibonacci numbers. More... over 6 years ago
Remove now extremely out-of-date documentation on running commands in canu. More... over 6 years ago
Remove now extremely out-of-date documentation on correcting reads. More... over 6 years ago
Remove a hack to make alignGFA work both on and off grid when under PBS control. More... over 6 years ago
Add -haplotype option to usage output. More... over 6 years ago
Add option -haplotype to stop after haplotype-specific reads are generated, and before assemblies are started. Issue #1140. More... over 6 years ago
Fix stopAfter correction and trimming so they stop after the FASTA is generated. Update docs too. More... over 6 years ago
Fix test if bogart has previously finished so it works with object stores. More... over 6 years ago
Remove old and now incorrect comment. More... over 6 years ago
Add command line usage for TrioCanu. More... over 6 years ago
Configure threads for cor and cns, even though memory is configured later. More... over 6 years ago
Add option 'minimap' to set the path to 'minimap2'. By default, use the one in your path. More... over 6 years ago
Don't try to run meryl for minimap. Issue #1132. More... over 6 years ago
Fix integer overflow - 64 bits! - when trying to pick parameters for 32-mers. More... over 6 years ago
Fix, maybe, failures running grid tasks directly when using PBS. Issue #1138. More... over 6 years ago
Add multi-set capability to operations. More... over 6 years ago
Add an importer for meryl. Changes merylCountArray, which is used for normal meryl counting. More... over 6 years ago
Rename private member _width to _sWidth. More... over 6 years ago
Add Elias Gamma, Elias Delta, and Zeckendorf codings. More... over 6 years ago
Rename the logBaseTwo() functions to countNumberOfBits() since that's what they were really doing. More... over 6 years ago
Return the size of the variable-length encoded data when it is added. More... over 6 years ago
Add an error message, fix a log message. More... over 6 years ago
Trivial change of variable name 'value' to 'suffix'. More... over 6 years ago
Trivial change of variable name 'value' to 'suffix'. More... over 6 years ago
Add a version 2 merylIndex format. But don't use it yet. More... over 6 years ago
Update faq.rst More... over 6 years ago
Merge branch 'master' of github.com:marbl/canu More... over 6 years ago
Ignore lines with dashes to avoid warning and dont default to kb for mem units, get them from the lshosts output More... over 6 years ago
Add a useful utility to lookup kmers in meryl databases. More... over 6 years ago
Add kmerIterator(), update splitHaplotypes and meryl to use it to generate kmers. More... over 6 years ago