C

canu

Settings | Report Duplicate

0

I Use This!

Low Activity

Commits : Listings

Analyzed about 16 hours ago. based on code collected about 16 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jul 21, 2024 — Jul 21, 2025 Showing page 45 of 351 Search / Filter on:
Save the splitHaplotype log and use it to decide if the unassigned reads should assembled, or even if the assemblies should be started at all.	Brian P. Walenz	More...				almost 7 years ago
Write a log (to stdout) of the number of reads/bases assigned to each haplotype.	Brian P. Walenz	More...				almost 7 years ago
Check that ovlMerDistinct and ovlMerThreshold are valid values.	Brian P. Walenz	More...				almost 7 years ago
Update overlapInCore threshold parameters to adjust for meryl's automagic filtering of unique kmers.	Brian P. Walenz	More...				almost 7 years ago
For inputs in an object store, download them inside canu as needed.	Brian P. Walenz	More...				almost 7 years ago
Add a couple of functions to directly access object store files.	Brian P. Walenz	More...				almost 7 years ago
Add a ;, grr!	Brian P. Walenz	More...				almost 7 years ago
Change mhapFilterThreshold from 5e-6 to 1e-7, i.e., mark more kmers as repeats.	Brian P. Walenz	More...				almost 7 years ago
Make meryl-process.sh skip results if they're already computed.	Brian P. Walenz	More...				almost 7 years ago
Fix stopAfter for meryl; add meryl-configure, meryl-count, and meryl-process to the existing meryl stopping point.	Brian P. Walenz	More...				almost 7 years ago
Fix short-circuiting in meryl so it'll recreate scripts if needed.	Brian P. Walenz	More...				almost 7 years ago
check for release label	Sergey Koren	More...				almost 7 years ago
Do not return from nextMer() if the kmer has a zero count; move on to the next mer (unless it too has a zero count, in which case we'll move on to the next mer (unless ....)).	Brian P. Walenz	More...				almost 7 years ago
Actually set the constant used for math -- increase, decrease, etc -- operations.	Brian P. Walenz	More...				almost 7 years ago
Remove extraneous logging.	Brian P. Walenz	More...				almost 7 years ago
Add conditional compilation to allow meryl (and sequence) to compile outside of Canu.	Brian P. Walenz	More...				almost 7 years ago
Call AS_configure() so we can parse --version.	Brian P. Walenz	More...				almost 7 years ago
Add comment about the meryl 'print' command line.	Brian P. Walenz	More...				almost 7 years ago
Make haplotyping (mostly) work in cloud mode. It still requires input files to be on a network disk.	Brian P. Walenz	More...				almost 7 years ago
Log if meryl-count.sh doesn't do anything because it's already done.	Brian P. Walenz	More...				almost 7 years ago
Minor cleanup on stashMerylShellCode() and fetchMerylShellCode(); don't do the operation if the database doesn't exist, or if it already exists, resp.	Brian P. Walenz	More...				almost 7 years ago
Add some newlines to emitted code to make things a bit more readable.	Brian P. Walenz	More...				almost 7 years ago
Don't fetch the ovlStore; it's not used.	Brian P. Walenz	More...				almost 7 years ago
When in the TEST objectStore environment, wipe the run directory before starting a job.	Brian P. Walenz	More...				almost 7 years ago
Fix object store for the meryl reimplementation; fix somewhat broken fileExistsShellCode().	Brian P. Walenz	More...				almost 7 years ago
Log all fetches.	Brian P. Walenz	More...				almost 7 years ago
Allow download --overwrite.	Brian P. Walenz	More...				almost 7 years ago
Be a little more descriptive when the command line can't be parsed.	Brian P. Walenz	More...				almost 7 years ago
Change the location of the fake object store.	Brian P. Walenz	More...				almost 7 years ago
fetchFromObjectStore()- Add a bunch of comments, do some minor cleaning, and fix a minor issue or two.	Brian P. Walenz	More...				almost 7 years ago

←
1
2
…
41
42
43
44
45
46
47
48
49
…
350
351
→