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Analyzed about 17 hours ago. based on code collected about 17 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jul 21, 2024 — Jul 21, 2025 Showing page 46 of 351 Search / Filter on:
Rename meryl 'histogram' to 'statistics', and add a new 'histogram' reporting just the frequency histogram, nothing else.	Brian P. Walenz	More...				almost 7 years ago
When trying to decide if the store has pacbio or nanopore, don't get confused by filenames.	Brian P. Walenz	More...				almost 7 years ago
Report versions of perl, java and canu in use at the start of every shell script. Issue #967.	Brian P. Walenz	More...				almost 7 years ago
In the parallel overlap store, skip completed steps in the scripts (before fetching data), and force recomputing incomplete steps on retries.	Brian P. Walenz	More...				almost 7 years ago
Remove stray logging.	Brian P. Walenz	More...				almost 7 years ago
Limit the number of meryl-count batches based on the number of sequences and bases. Issue #1085.	Brian P. Walenz	More...				almost 7 years ago
Remove explicit check on estimated number of kmers.	Brian P. Walenz	More...				almost 7 years ago
Disable stopOnReadQuality. Add stopOnLowCoverage=10 to catch when corrected or trimmed reads fail.	Brian P. Walenz	More...				almost 7 years ago
Don't print an error message in caExit() if the message is empty.	Brian P. Walenz	More...				almost 7 years ago
Add --no-progress.	Brian P. Walenz	More...				almost 7 years ago
Update gnuplot support to make it tolerate missing or faulty gnuplot; remove gnuplotTested option. Issue #1084.	Brian P. Walenz	More...				almost 7 years ago
Remove old version of object store simulator.	Brian P. Walenz	More...				almost 7 years ago
Remove old trioCanu executive.	Brian P. Walenz	More...				almost 7 years ago
Remove stray reference to removed ErrorEstimate module.	Brian P. Walenz	More...				almost 7 years ago
Fix race conditions when counting the number of kmers loaded; reduce memory needed to construct lookup table; fix reporting of said memory; generally disable logging.	Brian P. Walenz	More...				almost 7 years ago
Cleanup logging.	Brian P. Walenz	More...				almost 7 years ago
Use a 5-frequency window average (down from 9), and handle the start correctly, when computing the min/max frequencies to use.	Brian P. Walenz	More...				almost 7 years ago
Allow wildcard in -R: '-R *fasta'.	Brian P. Walenz	More...				almost 7 years ago
Disable mostly useless logging of memory allocated.	Brian P. Walenz	More...				almost 7 years ago
Remove some particularly annoying zeros from the status message.	Brian P. Walenz	More...				almost 7 years ago
Fix bad indenting.	Brian P. Walenz	More...				almost 7 years ago
Remove dead code: errorEstimate, compute a subset of overlaps to find the error rate in corrected reads, so we can set the cutoff error rate when computing all overlaps.	Brian P. Walenz	More...				almost 7 years ago
Remove dead code: merTrim, an Illumina read trimmer that used kmers for evidence. Works, but not useful in Canu.	Brian P. Walenz	More...				almost 7 years ago
Remove dead code: findSeedThreshold, an attempt at finding overlapInCore seed values based on how kmer-unique the read ends look. It didn't work.	Brian P. Walenz	More...				almost 7 years ago
When building the exact lookup table, make two passes through the kmers to get table sizes exactly correct.	Brian P. Walenz	More...				almost 7 years ago
If ovStore data files are fetched from an object store, remove them from local disk as they're closed.	Brian P. Walenz	More...				almost 7 years ago
Find the list of haplotypes from the keys of the read lists, preventing the same haplotype appearing multiple times in the list.	Brian P. Walenz	More...				almost 7 years ago
Assign loop end to simple variable so OpenMP is happy.	Brian P. Walenz	More...				almost 7 years ago
Report memory used, not the smallest memory possible.	Brian P. Walenz	More...				almost 7 years ago
Remove skipStage() and emitStage() (never worked, stubs since forever), replace with resetIteration().	Brian P. Walenz	More...				almost 7 years ago

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