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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jul 22, 2024 — Jul 22, 2025 Showing page 47 of 351 Search / Filter on:
Partition kmer evidence into 100 Mbp chunks, then let meryl pick how many chunks to process at once.	Brian P. Walenz	More...				almost 7 years ago
Remove non-functional haplotype support from submitScript().	Brian P. Walenz	More...				almost 7 years ago
Adjust memory usage estimate. It's still under-reporting memory used though.	Brian P. Walenz	More...				almost 7 years ago
Allocate merylCountArray as an array, not an array of pointers. Change how memory is accounted for to solve severe performance degradation with large prefixes.	Brian P. Walenz	More...				almost 7 years ago
Explicitly initialize bestPrefix in findBestPrefixSize().	Brian P. Walenz	More...				almost 7 years ago
Update estimates of amount of sequence in compressed files, though it's probably off by 2 for FASTQ.	Brian P. Walenz	More...				almost 7 years ago
Add secret option -E to estimate the number of bases that could be counted in some memory size.	Brian P. Walenz	More...				almost 7 years ago
Stop logging INITIALIZE during merylOperation::initialize(). I don't need a reminder that it's not doing the right thing.	Brian P. Walenz	More...				almost 7 years ago
Don't try to find/estimate uncompressed size of gz/bz2 files in AS_UTL_sizeOfFile(); gzip can't report sizes larger than 2GB and bzip2 was just a bad guess.	Brian P. Walenz	More...				almost 7 years ago
Fix issue with older perl and two adjacent code labels.	Brian P. Walenz	More...				almost 7 years ago
Skip FASTQ QV line using 'next', not 'continue'.	Brian P. Walenz	More...				almost 7 years ago
Fix error in error message.	Brian P. Walenz	More...				almost 7 years ago
Remove the original 'project kmer' meryl and associated libraries. Roughly 14.5 years old in its current form.	Brian P. Walenz	More...				almost 7 years ago
Add support for trio-binning to canu.	Brian P. Walenz	More...				almost 7 years ago
Fix minor memory leak; minor cleanup.	Brian P. Walenz	More...				almost 7 years ago
Update comment to reflect reality.	Brian P. Walenz	More...				almost 7 years ago
Updating stash to DNAnexus cloud * Switching from dx upload to ua to allow for resuming an upload * For the cases where the upload is streaming from stdin, we still need to worry about removing any incomplete files as uploading from stdin is not resumable.	Brett T. Hannigan	More...				almost 7 years ago
Update kmerCountExactLookup test code to handle dropping low/high frequency kmers.	Brian P. Walenz	More...				almost 7 years ago
Fix kmerCountExactLookup so it can drop low/high count kmers when loading data.	Brian P. Walenz	More...				almost 7 years ago
Load the statistics data upon trying to access it.	Brian P. Walenz	More...				almost 7 years ago
Add maxFrequency() to return the largest count in the histogram.	Brian P. Walenz	More...				almost 7 years ago
Merge pull request #1082 from rick-heig/patch-2	Sergey Koren	More...				almost 7 years ago
* Improving error message	Brett T. Hannigan	More...				almost 7 years ago
Updating stash code to retry on an upload failure when stashing to DNAnexus * Currently when stashing files to the DNAnexus platform the code does not check the return code to make sure the upload was successful. * This change uses a simple wrapper around dx upload to check the return code and retry up to 5 times if the upload fails. If it still is not successful, it will print out an error message.	Brett T. Hannigan	More...				almost 7 years ago
Process the dump inclusively too	Sergey Koren	More...				almost 7 years ago
Fixed typo in fast execution message	rick-heig	More...				almost 7 years ago
Update faq.rst	Sergey Koren	More...				almost 7 years ago
Don't stop after completing meryl. D'oh!	Brian P. Walenz	More...				almost 7 years ago
Replace 'old meryl' with 'new meryl'. Change the way frequent kmers are computed, hopefully finally resolving issue #796. TrioCanu is currently broken.	Brian P. Walenz	More...				almost 7 years ago
Add thresholding based on fraction-distinct and word-frequency.	Brian P. Walenz	More...				almost 7 years ago

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