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Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.
Aug 30, 2024 — Aug 30, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Fixed glitch when cacheing the very last block of the underlying file.
Eric Smith
More... almost 14 years ago
Fixed navigation dropdown size
Andrew Brook
More... almost 14 years ago
Data Table should update itself whenever the track list changes.
Eric Smith
More... almost 14 years ago
Standard Pair mode now displays "No data in range" if all the records were unmated.
Eric Smith
More... almost 14 years ago
By default, select the first row in the dialogTable, so that pressing the Find button always does something.
Eric Smith
More... almost 14 years ago
Cleaned up a few edge conditions in Standard Pair mode. MiscUtils.isMate() now checks for object identity rather than interval start. Bam and Rich renderers now share the same code for drawing white insertion diamonds.
Eric Smith
More... almost 14 years ago
Last check-in broke support for TDFs from local files.
Eric Smith
More... almost 14 years ago
Oops. Looks like I never tested accessing TDF files over HTTP.
Eric Smith
More... almost 14 years ago
Fixed cancel button on Windows
Andrew Brook
More... almost 14 years ago
Fixed long-standing bug where TDF tracks would have holes.
Eric Smith
More... almost 14 years ago
GO plug-in: made some minor changes.
Nirvana Nursimulu
More... almost 14 years ago
Removed some unwanted imports, and changed "savantbrowser" to "genomesavant". This will probably also need to be done for MedSavant...
Nirvana Nursimulu
More... almost 14 years ago
Reads which appear when you hover over an arc now honour the track's interval height.
Eric Smith
More... almost 14 years ago
New DNAish icon. Interval height was being applied to arc mode and coverage mode, with unfortunate results.
Eric Smith
More... almost 14 years ago
GO plugin: Fixed broken reference.
Nirvana Nursimulu
More... almost 14 years ago
Fixed destination dir for plugin manager
Andrew Brook
More... almost 14 years ago
Removed rudimentary Standard Pair mode which has been superseded by Andrew's code.
Eric Smith
More... almost 14 years ago
Moved "Read Pair" so that it's next to "Read Pair (Arc)" on the menu. In Bed Squish mode reverse strands are now drawn in the reverse strand colour.
Eric Smith
More... almost 14 years ago
Standard genomes now get their cytobands even if they're loaded from the Recent Tracks menu. Also fixes problem where Set as Genome would cause the cytoband to be lost.
Eric Smith
More... almost 14 years ago
Removed nearly-useless Recent Tracks area from start page.
Eric Smith
More... almost 14 years ago
BamFilterDialog now lets you filter out vendor failed reads, duplicate reads, and reads which fail to match a certain mapping quality threshold.
Eric Smith
More... almost 14 years ago
Command-bar reorganised by function: Tools, Display Mode, Appearance.
Eric Smith
More... almost 14 years ago
Error getting column names when viewing a JDBC Generic Interval track in the table view plugin.
Eric Smith
More... almost 14 years ago
Error if Strand column of Tabix mapping has zero-length entries. Happens if user maps Strand field to "(none)" in UCSC plugin.
Eric Smith
More... almost 14 years ago
Read Pair drawing mode
Andrew Brook
More... almost 14 years ago
Read Pair drawing mode
Andrew Brook
More... almost 14 years ago
Added Copy URL to Clipboard option. Carved new FrameCommandBar class out of Frame.java.
Eric Smith
More... almost 14 years ago
Added "Copy to Clipboard" item to "Sequence Options" menu.
Eric Smith
More... almost 14 years ago
Fixed transparency of directional icons on BamParametersDialog.
Eric Smith
More... almost 14 years ago
Terminology changes and smarter defaults for Bam parameters dialog.
Eric Smith
More... almost 14 years ago