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Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.
Aug 16, 2024 — Aug 16, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Tweaks to colour settings for interval tracks. Display Mode menu was not checking/unchecking properly.
Eric Smith
More... almost 14 years ago
Standard interface colours are now identified by ColourKey enum. Better integration of track colour settings and program colour settings.
Eric Smith
More... almost 14 years ago
SQL plugin had problems accessing Ensembl SQL server.
Eric Smith
More... almost 14 years ago
When opened, tall Bam tracks were initially scrolled to the top, rather than to the x-axis.
Eric Smith
More... almost 14 years ago
Sequence tracks are now half-height.
Eric Smith
More... almost 14 years ago
Provide user with helpful hint so that they know how to generate coverage file.
Eric Smith
More... almost 14 years ago
Eliminated unnecessary carriage-return when selecting a chromosome rather than a gene.
Eric Smith
More... almost 14 years ago
Location combo-box lets user choose between multiple instances of the same feature.
Eric Smith
More... almost 14 years ago
Fixed NegativeArraySizeException when dealing with malformed .gff file. Fixed ArrayIndexException when block fails to line up with thickness.
Eric Smith
More... almost 14 years ago
No longer locks up when loading dictionary. All threads have names. Fixed error creating tracks from Savant File Repository.
Eric Smith
More... almost 14 years ago
NullPointerException if Track.getDataInRange() returns null.
Eric Smith
More... almost 14 years ago
Swing-related utility classes unified under savant.util.swing. All threads should be given a name when they're constructed.
Eric Smith
More... almost 14 years ago
Fixes to reporting of mouse position.
Eric Smith
More... almost 14 years ago
ConcurrentModificationException in FrameController.closeAllFrames().
Eric Smith
More... almost 14 years ago
Bogus mouse positions being reported while track is loading.
Eric Smith
More... almost 14 years ago
Better error-reporting for loadPlugin() failures.
Eric Smith
More... almost 14 years ago
More code clean-up.
Eric Smith
More... almost 14 years ago
Incorporated SNP Finder 2 code and updated it for Savant 1.6.0.
Eric Smith
More... almost 14 years ago
NullPointerException if you choose .bam track directly from Start Page.
Eric Smith
More... almost 14 years ago
Network.downloadFile can now specify a destination file-name (in addition to a directory). Better cleanup of tracks associated with an aborted frame. Clearing up some unused classes. Drawing of coverage tracks when in arc mode.
Eric Smith
More... almost 14 years ago
Cancel button on ProgressPanel now resembles an Apple circled-X.
Eric Smith
More... almost 14 years ago
Swing-related utility classes unified under savant.util.swing. Added ability to cancel track creation and data retrieval.
Eric Smith
More... almost 14 years ago
Savant repository browser now uses genomes.xml as its index. Plugins can be enabled/disabled from the menu. Calling Track.getLayerCanvas() for the same plugin now returns the same canvas, instead of creating a new one. Cleanup of Amino Acid plugin.
Eric Smith
More... almost 14 years ago
Redraw tracks after changing resolution settings
Andrew Brook
More... almost 14 years ago
SNP mode - variants now on bottom/inside
Andrew Brook
More... almost 14 years ago
Render mismatches in arc mode
Andrew Brook
More... almost 14 years ago
Show reads on arc mode mouseover
Andrew Brook
More... almost 14 years ago
Reordered popup creation to avoid removing shape
Andrew Brook
More... about 14 years ago
Improved boundary testing for arc selection
Andrew Brook
More... about 14 years ago
NullPointerException opening .fa.savant track as first track.
Eric Smith
More... about 14 years ago