S

Staden Package

Settings | Report Duplicate

0

I Use This!

Activity Not Available

Commits : Listings

Analyzed 4 months ago. based on code collected over 3 years ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Dec 18, 2019 — Dec 18, 2020 Showing page 3 of 56 Search / Filter on:
* empty log message *	jkbonfield	More...				almost 15 years ago
Removed the filter code itself - this was previously copied to seq_utils library.	jkbonfield	More...				almost 15 years ago
GUI support for picking "reverse" sequences - ie where sequencing the other end of the template would solve a problem. (The logic for this already existed, but wasn't accessable via the GUI.)	jkbonfield	More...				almost 15 years ago
Fix to honour template_skip list in all places.	jkbonfield	More...				almost 15 years ago
* empty log message *	jkbonfield	More...				almost 15 years ago
Fix for embossdata; now requires a pathname too.	jkbonfield	More...				almost 15 years ago
Improvements to macros needed for large-file support.	jkbonfield	More...				almost 15 years ago
Added code to initialise some cache data structs to NULL when GAP_CACHE is disabled.	jkbonfield	More...				almost 15 years ago
Improvements to the < and > align button docs.	jkbonfield	More...				almost 15 years ago
Added sensible defaults for new system types.	jkbonfield	More...				almost 15 years ago
use global namespace in selection handler within copy_name.	jkbonfield	More...				almost 15 years ago
Check for AUTO_ASSEMBLE.USE_EXP_ARCHIVES - can't recall why I made this change! Sorry.	jkbonfield	More...				almost 15 years ago
Check for no reads in check_rnum2cnum.	jkbonfield	More...				almost 15 years ago
Protect against zero-length reference sequence.	jkbonfield	More...				almost 15 years ago
Fixed email address.	jkbonfield	More...				almost 15 years ago
Added tag types to anno_ele so we can get away with not using anno structs at all for the simple case of a tag marking just one region. Tag types are now stored in the range_t struct too, using the mqual field (TODO: use a union instead). Old old_type was stored here, but now fits in a flag instead.	jkbonfield	More...				almost 15 years ago
Fixed reference count leaks	jkbonfield	More...				almost 15 years ago
Added sequence_reset_ptr and sequence_copy functions to remove code duplication.	jkbonfield	More...				almost 15 years ago
GT_AnnoEle items are now blocked like sequences in a GT_AnnoEleBlock items instead. This massively reduces the file size for tag-rich databases.	jkbonfield	More...				almost 15 years ago
Strictly for debugging purposes, hache tables now have a name field. If set this outputs the name string in debugging output instead of using %p and the hache table pointer.	jkbonfield	More...				almost 15 years ago
Added support for displaying annotation colours.	jkbonfield	More...				almost 15 years ago
#ifdefed out code; for evaluating size of fastq files when complementing sequences to keep in assembly orientation.	jkbonfield	More...				almost 15 years ago
Bug fix cases where the item in xx->r[] is an annotation instead of a sequence (eg in edCursorUp, edCursorDown and edview_item_at_pos).	jkbonfield	More...				almost 15 years ago
Assert in sequence_get_pair() - spotted bin_index decoding issues.	jkbonfield	More...				almost 15 years ago
Fixed bug in decoding of SeqBlocks and seq->bin_index.	jkbonfield	More...				almost 15 years ago
compute_ypos() when operating in non-stacking mode no longer counts tags in computing Y coordinates.	jkbonfield	More...				almost 15 years ago
Fixed the nseqs counter so it isn't incremented by annotations.	jkbonfield	More...				almost 15 years ago
Now preserves the order in the input sam file when producing the output list. (Not needed, but useful for debugging purposes sometimes.)	jkbonfield	More...				almost 15 years ago
Added annotation support.	jkbonfield	More...				almost 15 years ago
Improved the auto-scaling and added a simple key.	jkbonfield	More...				almost 15 years ago

←
1
2
3
4
5
6
7
8
9
…
55
56
→