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Analyzed 4 months ago. based on code collected over 3 years ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Dec 18, 2019 — Dec 18, 2020 Showing page 4 of 56 Search / Filter on:
Added a rudimentary libraries Tk interface.	jkbonfield	More...				almost 15 years ago
Added ACE format output.	jkbonfield	More...				almost 15 years ago
Improved cigar string generation for SAM format.	jkbonfield	More...				almost 15 years ago
* empty log message *	jkbonfield	More...				almost 15 years ago
Upped the size of the range queries used in the contig_iter system from 1k to 10k.	jkbonfield	More...				almost 15 years ago
Fixed contig_iter_next and contig_iter_prev. When faced with sequences of varying length these sometimes caused duplicates during iteration.	jkbonfield	More...				almost 15 years ago
Added libraries as a data type.	jkbonfield	More...				almost 15 years ago
Fixed ACE file reading of complemented data.	jkbonfield	More...				almost 15 years ago
Tweaked the maximum data size of an uncompressed sequence block from 200k to 150k as this appears to be marginally more optimal in disk usage.	jkbonfield	More...				almost 15 years ago
Only flush changes every 65536 sequences now, as this improves data locality and reduces database fragmentation.	jkbonfield	More...				almost 15 years ago
Fixed contig names - we now use the references listed in the sam file.	jkbonfield	More...				almost 15 years ago
Added export_contigs.c	jkbonfield	More...				almost 15 years ago
Added a "File->Export Sequences" command.	jkbonfield	More...				almost 15 years ago
Added a simple tool to index sam files, building a .fai file suitable for use with "samtools import".	jkbonfield	More...				almost 15 years ago
The io->iface->bin.create method no longer creates a bin from a template, instead preferring simply to just allocate the record.	jkbonfield	More...				almost 15 years ago
We now store GT_Bin structs in a more optimal fashion.	jkbonfield	More...				almost 15 years ago
Made the minimum bin size a parameter of tg_index. This allows for a great improvement of speed and compression size when dealing with very low coverage data sets (eg many 1000G runs).	jkbonfield	More...				almost 15 years ago
MAJOR AND INCOMPATIBLE CHANGE	jkbonfield	More...				almost 15 years ago
Added signed versions of the 7-bit int encoding; int2s7 and s72int.	jkbonfield	More...				almost 15 years ago
Fixed memory leak in compute_ypos().	jkbonfield	More...				almost 15 years ago
Don't decrement the seq_t cache. This is unnecessary as it's not auto-incremented and it now produces issues for referencing counting of block data.	jkbonfield	More...				almost 15 years ago
Fixed memory leak: free memory for anno_hash.	jkbonfield	More...				almost 15 years ago
Handle sequences longer than MAX_SEQ_LEN. The #define should only be for static memory allocation for speed, and not a hard limit.	jkbonfield	More...				almost 15 years ago
When extending contigs and adding a new root bin we now inherit the count of sequences from the old root.	jkbonfield	More...				almost 15 years ago
Fixed an issue with resize events occurring all the time. This was due to changes in resize1.5 and subtracting the scrollbar size from ${w}(width). Now using a separate variable for this.	jkbonfield	More...				about 15 years ago
Added an "update idletasks" when moving the cursor window. This prevents oscillation as we scroll by generating motion events that are applied to the location of the old window, pre-move.	jkbonfield	More...				about 15 years ago
* empty log message *	jkbonfield	More...				about 15 years ago
Fixed an issue with the template display and ruler track not being on the same scale - the width of the Y scrollbar impacted the scaling.	jkbonfield	More...				about 15 years ago
The contig editor edview struct now contains a cursor_t element, holding the private cursor to use used in CURSOR_MOVE messages. This allows integration with other windows.	jkbonfield	More...				about 15 years ago
This plot now registers itself with the contig registration system. As such it now appears in the Results Manager and can display/control the contig editor editing cursors.	jkbonfield	More...				about 15 years ago

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