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Commits : Listings

Analyzed 5 months ago. based on code collected over 3 years ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Dec 18, 2019 — Dec 18, 2020 Showing page 51 of 56 Search / Filter on:
Min template score is now 0.1 (instead of 0.3).	jkb	More...				over 20 years ago
Added a call to read_experiment_redirect(), otherwise some traces read had no original position information. Also reformatted to remove windows linefeeds.	jkb	More...				over 20 years ago
Removed "bash"isms.	jkb	More...				over 20 years ago
Added "group by" options for the contig editor.	jkb	More...				over 20 years ago
check_template_length_overlap() has been rewritten to more correctly figure out if a template is inconsistent between two contigs. It now checks for primer inconsistencies, eg where two forward readings exist, but not at the same position or in differing orientations.	jkb	More...				over 20 years ago
Improved the align_blocks() function.	jkb	More...				over 20 years ago
Added new "group by" methods to the editor. In addition to the original "group by templates" we can group by strand, clone, name, number and position.	jkb	More...				over 20 years ago
Disable balign_sv as it's not included yet (part of the experimental shuffle pads code).	jkb	More...				over 20 years ago
Disable the new shuffle pads code for now.	jkb	More...				over 20 years ago
* empty log message *	jkb	More...				over 20 years ago
Unfinished new version of shuffle pads - added to make compilation work.	jkb	More...				over 20 years ago
Fixed a bug in StringMatch() ("search search" command) in the positions returned when looking in cutoff data.	jkb	More...				over 20 years ago
* empty log message *	jkb	More...				over 20 years ago
Added get_names_to_right method.	jkb	More...				over 20 years ago
The ednames "highlight" method now returns the highlight status.	jkb	More...				over 20 years ago
Moved update_reading_list function to edInterface.c	jkb	More...				over 20 years ago
More "select this reading and all to right" code.	jkb	More...				over 20 years ago
Replaced used of old fortran functions with C versions.	jkb	More...				over 20 years ago
Fixed a bug in computation of the number of spanning templates; displayed when shutting down the join editor.	jkb	More...				over 20 years ago
Added -no_csel and -csel options to control whether the contig selector starts automatically.	jkb	More...				over 20 years ago
Fixed a tag corruption bug in disassemble readings whereby the annotation freelist could get joined onto the end of a contig list when duplicating tags (due to breaking a contig).	jkb	More...				over 20 years ago
Improved reading selection from within the editor. Added a "select all from right" option (and made it work snappily).	jkb	More...				over 20 years ago
Code tidyup to remove unused fortran functions	jkb	More...				over 20 years ago
Remove pads from sequence in "find sequence" function before doing the search. (It matches padded data fine anyway, so this just avoids the user having the depad their query sequence.)	jkb	More...				over 20 years ago
Fixed a bug in merging the db.free_notes fields.	jkb	More...				over 20 years ago
Fixed a bug in swap_read() (used by disassemble readings). It wasn't relinking the "prev" field of notes back to the newly renumbered sequence.	jkb	More...				over 20 years ago
Fixed various disassemble readings bugs relating to annotations and splitting contigs. Whether to duplicate the annotations is now an option (although at present omitted from the GUI as it doesn't honour this flag in all cases).	jkb	More...				over 20 years ago
First updates from new cvs2changelog tool.	jkb	More...				over 20 years ago
Load List has an option to specify a list to be a "Reading List". This then automatically tags it with SEQID to allow hyperlinks to work.	jkb	More...				over 20 years ago
* empty log message *	jkb	More...				over 20 years ago

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