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Analyzed 5 months ago. based on code collected over 3 years ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Dec 18, 2019 — Dec 18, 2020 Showing page 52 of 56 Search / Filter on:
Removed debugging	jkb	More...				over 20 years ago
Fixed a bug in TEMP_DIRECTION macro where it returned direction -1 for any error, rather than only on a TEMP_CONSIST_STRAND error.	jkb	More...				over 20 years ago
When computing the template direction we now set this from the first contig in the list rather than the last. The first in the list will always be the first contig specified in init_template_checks, and so is the 'correct' contig for use within prefinish.	jkb	More...				over 20 years ago
When setting the template direction we no longer set it to ? when there is an inconsistency. This means that the template direction will be set to the most well represented direction (unless it is 50/50 split in which case it is still ?).	jkb	More...				over 20 years ago
Added low_quality solution picking	jkb	More...				over 20 years ago
* empty log message *	jkb	More...				over 20 years ago
* empty log message *	jkb	More...				over 20 years ago
New function calignm(). Like calign(), but the alignment matrix (W128) is an argument. The default matrix is now case insensitive too.	jkb	More...				over 20 years ago
Removed a memory read-overflow.	jkb	More...				over 20 years ago
Added ARC= and URL= RAWDATA search methods to fetch traces via the ensembl trace archive and via a URL.	jkb	More...				over 20 years ago
Moved checking of file format to after trace widget has loaded the file. This removes the need to load the trace twice (the first load was in determine_trace_type, now not used).	jkb	More...				over 20 years ago
Added Tcl_ResultResult call to to get_name method.	jkb	More...				over 20 years ago
Overhaul of split_contig_tags.	jkb	More...				over 20 years ago
New disassemble readings interface.	jkb	More...				over 20 years ago
Added a "clear list" option to the names widget.	jkb	More...				over 20 years ago
Removed Fortran version of disassemble readings (now in C).	jkb	More...				over 20 years ago
Moved the remove_contig_holes from assemble_direct to dis_readings. Rewrote remove contig as a disassemble (for entire contig). Major overhaul of disassemble readings.	jkb	More...				over 20 years ago
Include more prototypes.	jkb	More...				over 20 years ago
Added prototype for IO.h	jkb	More...				over 20 years ago
Minor comment changes	jkb	More...				over 20 years ago
Converted cr/nl to nl.	jkb	More...				over 20 years ago
Added code in stikit_ to set r.sense prior to calling io_write_seq(). The changes made a while back to io_write_seq() to update the in-memory io_length array caused the fortran code to break as it uses the sign of the length to set the orientation.	jkb	More...				over 20 years ago
Protect against the template (subclone_id) in get_subclone_info from being zero and causing a crash. Only an issue for the old "suggest primers" function and gap2caf.	jkb	More...				over 20 years ago
In the editor reading numbers now have +/- instead of <blank>/- to indicate strand.	jkb	More...				over 20 years ago
Set email address to ask users to report bugs as [email protected]	jkb	More...				over 20 years ago
Spanning template status is displayed from the join editor when the quit button is pressed.	jkb	More...				over 20 years ago
Add template-end tolerance code to more locations to allow for missing vector at the end of primer-walks.	jkb	More...				over 20 years ago
Default "chem_as_double" is now 0 (off)	jkb	More...				over 20 years ago
Added in the colours of template status within the editor.	jkb	More...				over 20 years ago
Added template status analysis into the contig editor names display.	jkb	More...				over 20 years ago

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