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Analyzed 5 months ago. based on code collected over 3 years ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Dec 18, 2019 — Dec 18, 2020 Showing page 53 of 56 Search / Filter on:
Fixed out by one error.	jkb	More...				over 20 years ago
* empty log message *	jkb	More...				over 20 years ago
Added the ability to search by sequence within the readings as well as the consensus.	jkb	More...				over 20 years ago
Bugfix to selection changes when using a "range" contig_id	jkb	More...				over 20 years ago
The contig identifier box and the 'value' component in the editor search boxes are now automatically selected and focused, meaning that users can simply type over the previous value.	jkb	More...				over 20 years ago
Added a baseline (-b) option to remove background.	jkb	More...				over 20 years ago
Removed -rpath support as it causes more problems than it cures.	jkb	More...				over 20 years ago
More error checking on writing compressed files.	jkb	More...				over 20 years ago
Added a -fofn option	jkb	More...				over 20 years ago
Protect against the base spacing being listed as a negative number in the ABI file.	jkb	More...				over 20 years ago
* empty log message *	jkb	More...				over 20 years ago
Extended the database_info (and similar) callback functions to take new job types for insertion and deletion into sequences. This is currently only used by the new experimental shuffle pads option.	jkb	More...				over 20 years ago
Added protection for a defined, but empty, GTAGDB environment variable.	jkb	More...				over 20 years ago
Added a GC_Clamp option to the oligo selection dialogue, and remember the users inputs for some other bits.	jkb	More...				over 20 years ago
Improved log file handling to write out the username opening the database and a message when the lock file is overridden.	jkb	More...				over 20 years ago
Fixed a bug in Find Internal Joins where it failed to spot some matches.	jkb	More...				over 20 years ago
Added hyperlinks to the disassemble and 'set active list' lists created from the editor.	jkb	More...				over 20 years ago
Added an svec_as_cvec flag to allow SVEC tags to be treated as the clone end. This is useful for finishing EST sequences with one EST per contig.	jkb	More...				over 20 years ago
Contig holes left after a disassembly are now stripped out, fixing db inconsistencies. This function will also be useful for the disassemble readings rewrite.	jkb	More...				over 20 years ago
* empty log message *	jkb	More...				over 20 years ago
Set upper limit on the size of set_band_blocks to 5000 so that really long alignments do not consume too much memory.	jkb	More...				over 20 years ago
Ensure that io_length() memory cache is kept up to date when io_write_seq modifies it.	jkb	More...				over 20 years ago
When we have a tr->largest block long enough to hold the requested length, we were returning NULL (due to broken code ordering) instead of returning the block. This causes the database to unnecessarily grow!	jkb	More...				over 20 years ago
New scripts for interfacing with the chickenEST project and the new finish_me3 perl script.	jkb	More...				over 20 years ago
When searching for a solution on the bottom strand, set the position to solve as the right hand end of this problem. Likewise for the top strand (which is true by default).	jkb	More...				over 20 years ago
Fixed default value of pwalk_nsolutions from 400 (a cut and paste error) to 1. Luckily finish.tcl specified this explicitly.	jkb	More...				over 20 years ago
1.22	jkb	More...				almost 21 years ago
We now search for fake templates (func skip_fake_templates) based on looking for sequences without trace files. This is in addition to the usual skip_templates file and provides an easy automatic way of filtering out imported consensus sequences and the like.	jkb	More...				almost 21 years ago
Added a -version option to the finish_sanger program. Added a "version" method to the finish object.	jkb	More...				almost 21 years ago
Sanger specific finish.tcl config with multiple configurations in a single file, selectable via command line arguments.	jkb	More...				almost 21 years ago

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