Open Hub
Open Hub

Tags : Browse Projects

Select a tag to browse associated projects and drill deeper into the tag cloud.

Chaste

Compare

  Analyzed about 5 hours ago

Chaste - Cancer Heart And Soft Tissue Environment Chaste is a computational biology simulation package. It provides a cardiac simulation package which provides a way to use CellML electrophysiology models in tissue simulations. The cardiac code is suitable for high performance computing on large ... [More] supercomputers. The cell-based side of the code provides a variety of agent-based models (cellular automata, cell-centre-based (on and off mesh), cell vertex, cellular Potts models) for use in biological settings where cells divide and die according to other models. For details please see the recent overview paper in PLoS Computational Biology www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002970 [Less]

459K lines of code

9 current contributors

2 months since last commit

3 users on Open Hub

Moderate Activity
5.0
 
0 Reviews
I Use This
Mostly written in C++
Licenses: BSD-3-Clause
Tags biology cancer cardiac electrophysiology mathematical_model simulation soft-tissue vertex

Functional Curation Web Interface

Compare

  Analyzed about 7 hours ago

Provides a user-friendly web interface to the Functional Curation system for evaluating and comparing mathematical models of biological systems under a range of experimental scenarios.

102K lines of code

0 current contributors

over 7 years since last commit

2 users on Open Hub

Inactive
0.0
 
0 Reviews
I Use This
Mostly written in JavaScript
Licenses: BSD-3-Clause
Tags cardiac cellml electrophysiology mathematical_model simulation virtual_experiment

OpenCOR

Compare

  Analyzed 1 day ago

OpenCOR is a cross-platform modelling environment which can be used to organise, edit, simulate and analyse CellML files.

114K lines of code

2 current contributors

about 2 months since last commit

2 users on Open Hub

Low Activity
5.0
 
0 Reviews
I Use This
Mostly written in C++
Licenses: gpl3
Tags cardiac cellml electrophysiology mathematical_model simulation

libnix

Compare

Claimed by German Neuroinformatics Node Analyzed about 19 hours ago

NIX: Neuroscience information exchange format The NIX project (previously called Pandora) started as an initiative of the Electrophysiology Task Force which is part of the INCF Datasharing Program. As such the project aims to develop standardized methods and models for storing electrophysiology ... [More] and other neuroscience data together with their metadata in one common file format based on HDF5. [Less]

29.1K lines of code

4 current contributors

over 2 years since last commit

2 users on Open Hub

Inactive
5.0
 
0 Reviews
I Use This
Mostly written in C++
Licenses: BSD-4-Clause
Tags data electrophysiology hdf5 neuroscience

nixpy

Compare

Claimed by German Neuroinformatics Node Analyzed 1 day ago

Python bindings for the NIX library

13.4K lines of code

6 current contributors

4 months since last commit

1 users on Open Hub

Very Low Activity
5.0
 
0 Reviews
I Use This
Mostly written in Python
Licenses: BSD-4-Clause
Tags data electrophysiology hdf5 metadata neuroscience

NeuralEnsemble-Elephant

Compare

  Analyzed 1 day ago

Elephant is the ElectroPhysiology Analysis Toolkit

27.7K lines of code

11 current contributors

6 months since last commit

0 users on Open Hub

Very Low Activity
0.0
 
0 Reviews
I Use This
Mostly written in Python
Licenses: BSD-3-Clause
Tags dataanalysis electrophysiology neuroscience Python timeseries

NeuralEnsemble:Neo

Compare

  Analyzed about 24 hours ago

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats.

45.3K lines of code

19 current contributors

6 days since last commit

0 users on Open Hub

High Activity
0.0
 
0 Reviews
I Use This
Mostly written in Python
Licenses: BSD-3-Clause
Tags electrophysiology neuroscience numpy

ApPredict Web Portal

Compare

  Analyzed about 1 hour ago

Collection of components which provide a web interface to cardiac action potential prediction under blockade of cardiac ion channels.

183K lines of code

3 current contributors

about 2 years since last commit

0 users on Open Hub

Inactive
0.0
 
0 Reviews
I Use This
Mostly written in Java
Licenses: BSD-3-Clause
Tags cardiac electrophysiology portal simulation web

ApPredict

Compare

  No analysis available

ApPredict is a free open source program for prediction of action potential changes under drug-block of ion channels. The ion channel block is modelled as conductance block, and it can be used with a number of action potential models (specified using CellML), different pacing rates. Blockade of ... [More] the following ion channels can be included: IKr (hERG), IKs (KCNQ1), ICaL (CaV1.2), INa (NaV1.5), Ito (Kv4.3), IK1 (KCNN4). [Less]

0 lines of code

1 current contributors

0 since last commit

0 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
I Use This
Mostly written in language not available
Licenses: BSD-3-Clause
Tags cardiac compound drug electrophysiology simulation

CESE

Compare

  No analysis available

Cell Electrophysiology Simulation Environment (CESE)

0 lines of code

0 current contributors

0 since last commit

0 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
I Use This
Mostly written in language not available
Licenses: No declared licenses
Tags electrophysiology heart neuron