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PyMVPA

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  Analyzed 8 months ago

Python module to ease pattern classification analyses of large datasets. It provides high-level abstraction of typical processing steps (e.g. data preparation, classification, feature selection, generalization testing), a number of implementations of some popular algorithms (e.g. kNN, Ridge ... [More] Regressions, Sparse Multinomial Logistic Regression, GPR. RFE, I-RELIEF), and bindings to external ML libraries (libsvm, shogun, R). While it is not limited to neuroimaging data (e.g. FMRI) it is eminently suited for such datasets. [Less]

139K lines of code

6 current contributors

over 1 year since last commit

8 users on Open Hub

Activity Not Available
5.0
 
0 Reviews
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Mostly written in Python
Licenses: MIT
Tags analysis classifiers data_mining development education framework library machine_learning neuroscience pattern_recognition python research 1 more...

nipy

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  Analyzed about 1 month ago

The purpose of NIPY is to make it easier to do better brain imaging research. We believe that neuroscience ideas and analysis ideas develop together. Good ideas come from understanding; understanding comes from clarity, and clarity must come from well-designed teaching materials and well-designed ... [More] software. The software must be designed as a natural extension of the underlying ideas. We aim to build software that is: * clearly written * clearly explained * a good fit for the underlying ideas * a natural home for collaboration [Less]

69.9K lines of code

4 current contributors

4 months since last commit

8 users on Open Hub

Activity Not Available
5.0
 
0 Reviews
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Mostly written in Python
Licenses: BSD-4-Cla...
Tags analysis fmri neuroimaging neuroinformatics neuroscience pipeline python statistics

libnix

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Claimed by German Neuroinformatics Node Analyzed about 1 month ago

NIX: Neuroscience information exchange format The NIX project (previously called Pandora) started as an initiative of the Electrophysiology Task Force which is part of the INCF Datasharing Program. As such the project aims to develop standardized methods and models for storing electrophysiology ... [More] and other neuroscience data together with their metadata in one common file format based on HDF5. [Less]

25K lines of code

7 current contributors

4 months since last commit

2 users on Open Hub

Activity Not Available
5.0
 
0 Reviews
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Mostly written in C++
Licenses: BSD-4-Clause
Tags data electrophysiology hdf5 neuroscience

BRIAN simulator

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  Analyzed 8 months ago

Brian is a simulator for spiking neural networks available on almost all platforms. The motivation for this project is that a simulator should not only save the time of processors, but also the time of scientists. Brian is easy to learn and use, highly flexible and easily extensible. The Brian ... [More] package itself and simulations using it are all written in the Python programming language, which is an easy, concise and highly developed language with many advanced features and development tools, excellent documentation and a large community of users providing support and extension packages. [Less]

109K lines of code

1 current contributors

over 1 year since last commit

2 users on Open Hub

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0.0
 
0 Reviews
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Mostly written in Python
Licenses: CeCILL v2.1
Tags networksimulation neuronalnetwork neurons neuroscience python science scienceresearch scientific scientificcomputing scientific_computing scientificlibrary scientificsoftware 4 more...

nengo

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  Analyzed 8 months ago

Nengo is a suite for building and simulating models of large neural networks. It is based on Eliasmith & Anderson's Neural Engineering Framework, which provides a coherent theory of computation, representation, and dynamics in neural circuits.

18.4K lines of code

14 current contributors

over 1 year since last commit

2 users on Open Hub

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0.0
 
0 Reviews
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Mostly written in Python
Licenses: MPL-1.1
Tags engineering framework java network neural neuron neuroscience python

PyNIfTI

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  Analyzed about 1 month ago

PyNIfTI aims to provide easy access to NIfTI images from within Python. It uses SWIG-generated wrappers for the NIfTI reference library and provides the NiftiImage class for Python-style access to the image data. While PyNIfTI is not yet complete (i.e. doesn't support everything the C library can ... [More] do), it already provides access to the most important features of the NIfTI-1 data format and libniftiio capabilities. [Less]

97K lines of code

0 current contributors

almost 3 years since last commit

2 users on Open Hub

Activity Not Available
5.0
 
0 Reviews
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Mostly written in Python
Licenses: MIT
Tags api game_development neuroscience python python-ogre

neurorighter

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  Analyzed about 1 year ago

NeuroRighter is an open-source system for multi-electrode closed-loop recording and stimulation. The software is free, and the hardware schematics and layouts are free for download. It's partially described in the Rolston et al. (http://www.frontiersin.org/neuroengineering/paper/10.3389/neuro.16/012.2009/).

106K lines of code

0 current contributors

over 3 years since last commit

2 users on Open Hub

Activity Not Available
5.0
 
0 Reviews
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Mostly written in C#
Licenses: GPL-3.0+
Tags c# electrophysiology multichannel neuroscience real_time

PyNN API

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  Analyzed about 1 month ago

PyNN (pronounced 'pine' ) is a is a simulator-independent language for building neuronal network models. In other words, you can write the code for a model once, using the PyNN API and the Python programming language, and then run it without modification on any simulator that PyNN supports ... [More] (currently NEURON, NEST, PCSIM and Brian). [Less]

26.8K lines of code

2 current contributors

5 months since last commit

2 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
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Mostly written in Python
Licenses: No declared licenses
Tags neuroscience simulation spikingneuralnetworks

neuronvisio

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  Analyzed about 1 month ago

A Graphical User Interface with 3D Visualization features for NEURON simulation enviroment

61.9K lines of code

2 current contributors

5 months since last commit

1 users on Open Hub

Activity Not Available
5.0
 
0 Reviews
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Mostly written in Python
Licenses: GPL-2.0+
Tags neurons neuroscience python science

expyriment

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  Analyzed about 1 year ago

Expyriment is an open-source Python library for designing and conducting timing-critical behavioural and neuroimaging experiments. Our major goal is to provide a lightweight and well-structured Python library for the script-based experiment development. Readability and portability of the ... [More] resulting programme code are of highest priority. The library is an all-in-one solution as it handles stimulus presentation, the recording of input/output events, communication with other devices, and the collection and preprocessing of data. It further offers a hierarchical design structure, which allows for an intuitive transition from the experimental design to a running programme and is therefore also well suited for students and researchers with little programming experience. [Less]

16K lines of code

3 current contributors

about 1 year since last commit

1 users on Open Hub

Activity Not Available
5.0
 
0 Reviews
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Mostly written in Python
Licenses: GPL-3.0
Tags cognitive experiment experimental neuro neuroscience psychology python science