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Analyzed about 22 hours ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
May 21, 2023 — May 21, 2024 Showing page 47 of 50 Search / Filter on:
Add bio-linux packages; allow selective installation of package groups; test all packages on latest Ubuntu 10.04	chapmanb	More...				about 14 years ago
Provide some useful in-line documentation about what is happening with the key/value splitting	Brad Chapman	More...				about 14 years ago
Handle GFF3 files with malformed key-value pairs and self-referential parent child IDs; thanks to Eli Papa for the report	Brad Chapman	More...				about 14 years ago
Update automated builds; handle java acceptance; remove non-existant packages; add additional packages from bioperl-max	chapmanb	More...				about 14 years ago
R upgrade script plus finalize galaxy script for cluster	Brad Chapman	More...				about 14 years ago
Handle examining GFF files with FASTA directives	Brad Chapman	More...				about 14 years ago
Provide eland genome indexing	Brad Chapman	More...				about 14 years ago
Handle extra trailing commas in GFF3 attributes; thanks to Vipin for problem report	Brad Chapman	More...				about 14 years ago
Add 2bit format, check for UCSC tools, and hg19	Brad Chapman	More...				about 14 years ago
Include random chromosomes from UCSC; sort chromsomes for consistent order across computers	Brad Chapman	More...				about 14 years ago
Initial automated build for biolinux on ec2, bootstrapped with machetEC2 packages	chapmanb	More...				about 14 years ago
maq installation and indexing	Brad Chapman	More...				about 14 years ago
Add automated installs for next-gen tools and additional deployment server	Brad Chapman	More...				about 14 years ago
Add GlimmerHMM and reference examples	Brad Chapman	More...				about 14 years ago
Provide GFF3 version of GlimmerHMM to protein sequences	Brad Chapman	More...				about 14 years ago
Script to convert GlimmerHMM and reference files into protein predictions	Brad Chapman	More...				about 14 years ago
Add arachne indexing to reference genomes	Brad Chapman	More...				about 14 years ago
Provide ability to index GFF files and access by coordinates	Brad Chapman	More...				about 14 years ago
Provide ability to index GFF files and access by coordinates	Brad Chapman	More...				about 14 years ago
Fabric deployment script to install libraries and update Galaxy configuration files for NGS.	Brad Chapman	More...				about 14 years ago
Generalize intermine queries, adding additional query builders	chapmanb	More...				over 14 years ago
Update BioGateway queries with synchronize query building interface; Add additional queries	chapmanb	More...				over 14 years ago
Provide a client query interface to data at InterMine	Brad Chapman	More...				over 14 years ago
Initial query builder for Biogateway semantic web resources	Brad Chapman	More...				over 14 years ago
Quick script to do SPARQL queries on SADI	Brad Chapman	More...				over 14 years ago
Example code for expression retrieval from GEO	Brad Chapman	More...				over 14 years ago
Handle GFF files without strand information	Brad Chapman	More...				over 14 years ago
Allow blank lines in GFF Examiner	Brad Chapman	More...				over 14 years ago
Simplify top level GFF parsing and writing with high level functions. Thanks to Michiel de Hoon for the usage suggestion. Removed use of decorator module.	Brad Chapman	More...				over 14 years ago
Add ability to run as script	Brad Chapman	More...				over 14 years ago

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