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Analyzed about 6 hours ago. based on code collected about 20 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
May 15, 2023 — May 15, 2024 Showing page 48 of 50 Search / Filter on:
Update edgeR analysis for new 1.3+ version in Bioconductor	Brad Chapman	More...				over 14 years ago
Handle trimming case with no local alignment; trim adaptors plus associated quality score strings	Brad Chapman	More...				over 14 years ago
Remove unneeded imports	Brad Chapman	More...				over 14 years ago
Remove uncessary function in slimmed down version	Brad Chapman	More...				over 14 years ago
Adjust example file for interesting results and update script	Brad Chapman	More...				over 14 years ago
Initial revision of GO analysis	Brad Chapman	More...				over 14 years ago
Generate identifiers for parent child relationships when writing output, picking up standard NCBI identifiers where relevant	Brad Chapman	More...				over 14 years ago
Clarify p-value extraction using column names; thanks to Laurent Gautier for the suggestion	Brad Chapman	More...				over 14 years ago
Differential expression analysis -- small fixes	Brad Chapman	More...				over 14 years ago
Differential expression analysis -- small fixes	Brad Chapman	More...				over 14 years ago
Differential expression analysis example	Brad Chapman	More...				over 14 years ago
SQLAlchemy definitions for BioSQL; partial implementation	Brad Chapman	More...				over 14 years ago
Do not fail with empty lines in GFF files.	Brad Chapman	More...				almost 15 years ago
Avoid alignment overhead when exact match found	Brad Chapman	More...				almost 15 years ago
Handle SeqRecords and Seqs more cleanly; fix local alignment bug.	Brad Chapman	More...				almost 15 years ago
Improve naming and use of decorator functionality	Brad Chapman	More...				almost 15 years ago
Merge branch 'master' of [email protected]:chapmanb/bcbb	Brad Chapman	More...				almost 15 years ago
Add general trimmer for short read sequences	Brad Chapman	More...				almost 15 years ago
Batch convert a flattened library of files to an organism in Galaxy	Brad Chapman	More...				almost 15 years ago
Merge branch 'master' of [email protected]:chapmanb/bcbb	Brad Chapman	More...				almost 15 years ago
Add sorting example for MAF files	Brad Chapman	More...				almost 15 years ago
Update examiner to support files and handles; output to work with non-string list key value pairs	Brad Chapman	More...				almost 15 years ago
New structure works with Disco parallelization	Brad Chapman	More...				almost 15 years ago
Refactor interface to be more Biopython-like with parse function; updated tests and scripts to match	Brad Chapman	More...				almost 15 years ago
Update to work with python2.4; include parsing of alternative GFF2 nesting	Brad Chapman	More...				about 15 years ago
Additional fixes for GFF2 to GFF3 writing after real life tests	Brad Chapman	More...				about 15 years ago
Update couchdb test with bulk loading fixed from Paul and Chris	Brad Chapman	More...				about 15 years ago
Merge branch 'master' of git://github.com/jchris/bcbb	Brad Chapman	More...				about 15 years ago
Updates for converting GFF2 to GFF3 output	Brad Chapman	More...				about 15 years ago
fix final loop bug	Chris Anderson	More...				about 15 years ago

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