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Analyzed about 9 hours ago. based on code collected about 9 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 01, 2024 — Aug 01, 2025 Showing page 99 of 114 Search / Filter on:
vcffilter,gtcheck: Added sanity checks; Extended help message; Changed the order of columns on gtcheck output	Petr Danecek	More...				about 12 years ago
vcfcheck: Changed output format of Ts/Tv	Petr Danecek	More...				about 12 years ago
resolved test/check.chk conflict	Petr Danecek	More...				about 12 years ago
Replace with samtools's ksort	John Marshall	More...				about 12 years ago
Updated tests	Petr Danecek	More...				about 12 years ago
vcffilter &friends: Filtering of indels now supported. Changes in vcfcheck, plot-vcfcheck and vcfquery to reflect that. More changes and fixes to come, but this version seems stable and fully functional.	Petr Danecek	More...				about 12 years ago
vcfmerge, vcfnorm: Append command and version string to VCF header	Petr Danecek	More...				about 12 years ago
vcf.[hc]: API to update FILTER column. BCF output not supported yet in this version	Petr Danecek	More...				about 12 years ago
vcfutils: bcf_gt_type should not be declared as static	Petr Danecek	More...				about 12 years ago
add tests for vcfsubset	Shane McCarthy	More...				about 12 years ago
add new tool vcfsubset	Shane McCarthy	More...				about 12 years ago
deal with Number=A and Number=G INFO and FORMAT fields when trimming alleles	Shane McCarthy	More...				about 12 years ago
tbx: Allow indexing of empty files, do not segfault	Petr Danecek	More...				about 12 years ago
vcfview: Fix in bcf_subset; force unpacking on VCF output	Petr Danecek	More...				about 12 years ago
Merge changes from samtools's kstring	John Marshall	More...				about 12 years ago
Fix <stdarg.h> include	John Marshall	More...				about 12 years ago
Revert to kstring.h with a separate kstring.c	John Marshall	More...				about 12 years ago
vcfcheck: More readable output, replace "-" by "<STDIN>" when reading from standard input	Petr Danecek	More...				about 12 years ago
Port fixes from samtools razf.c/h to htslib.	Martin Pollard	More...				about 12 years ago
vcfcheck: create additional ts/tv stats which counts 1st alternate allele only	Petr Danecek	More...				about 12 years ago
vcffilter: skip the two additional score fields when applying SOM filters	Petr Danecek	More...				about 12 years ago
vcffilter: First step towards indel filtering - new switch to select from good sites mask	Petr Danecek	More...				about 12 years ago
vcfmerge: Fixed subtle bugs revealed when merging FMT fields of different lengths; Append version string and command to the output VCF header	Petr Danecek	More...				about 12 years ago
vcf core lib: Added sanity check to catch up common problem makers, such as PL declared as Number=. instead of Number=G; Support for output of more than 64 alternate alleles; API to access bcfinfo_t header line information.	Petr Danecek	More...				about 12 years ago
vcfcheck: Fixed a bug introduced by recent changed in synced reader	Petr Danecek	More...				about 12 years ago
vcffilter: backup commit, bad SOM now working	Petr Danecek	More...				about 12 years ago
Merge branch 'lite'	Heng Li	More...				about 12 years ago
optionally output OQ instead of QUAL	Heng Li	More...				about 12 years ago
Merge remote branch 'mp15/develop' into develop	Petr Danecek	More...				about 12 years ago
vcfmerge, vcfisec: Change in synced reader's API, allow unlimited number of input files. (Previously the limit was sizeof(int)*8)	Petr Danecek	More...				about 12 years ago

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