H

htslib

Settings | Report Duplicate

1

I Use This!

Moderate Activity

Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 16, 2024 — Aug 16, 2025 Showing page 101 of 114 Search / Filter on:
core vcf: added API for modifying/deleting/adding INFO fields, currently only VCF output supported; vcfmerge: AN,AC tags now updated correctly.	Petr Danecek	More...				over 12 years ago
bcf core lib: Fixed a silly bug from the last commit. FILTER=PASS indeed must come first, but only after the ##fileformat string.	Petr Danecek	More...				over 12 years ago
bcf core lib: PASS filter must come first in order to conform to BCF specification	Petr Danecek	More...				over 12 years ago
vcfgtcheck: Slight change in semantics, -g now used only for the known genotypes.	Petr Danecek	More...				over 12 years ago
gtcheck: added per-sample depth plot	Petr Danecek	More...				over 12 years ago
bcf_set_iarray: fix in incrementing typed pointer	Petr Danecek	More...				over 12 years ago
vcfgtcheck: new functionality - multi-sample cross-check of genotypes	Petr Danecek	More...				over 12 years ago
vcf.[hc]: convenience routine for converting BCF_INT types into C ints	Petr Danecek	More...				over 12 years ago
vcfquery: Do not crash when no arguments given	Petr Danecek	More...				over 12 years ago
synced_reader: Allow reading of unindexed .vcf and .vcf.gz in more situations	Petr Danecek	More...				over 12 years ago
vcf_format1: move the string initialization outside so that the method can work in append mode (used by vcfquery)	Petr Danecek	More...				over 12 years ago
Merge branch 'master' of github.com:samtools/htslib	Petr Danecek	More...				over 12 years ago
vcfnorm: Bugfixes, more robust realignment, more sanity checks.	Petr Danecek	More...				over 12 years ago
compiling error	Heng Li	More...				over 12 years ago
Merge pull request #9 from kmsquire/fix_secondary_check	Heng Li	More...				over 12 years ago
Bugfix: core is a member of bam1_t->core	Kevin Squire	More...				over 12 years ago
Merge branch 'lite'	Heng Li	More...				over 12 years ago
bam2fq: skip secondary alignments	Heng Li	More...				over 12 years ago
Merge branch 'lite'	Heng Li	More...				over 12 years ago
added this missing file	Heng Li	More...				over 12 years ago
vcfnorm: Sanity check for reference sequence mismatches	Petr Danecek	More...				over 12 years ago
vcfnorm fix: segfault on nasty case of indel; synced_reader fix: read from stdin	Petr Danecek	More...				over 12 years ago
Updated test file for vcfcheck	Petr Danecek	More...				over 12 years ago
Merge branch 'master' of github.com:samtools/htslib	Petr Danecek	More...				over 12 years ago
Synced VCF/BCF reader and most of the vcf*tools now read from stdin. Speedup in vcf_parse1 by skipping fields which are not needed.	Petr Danecek	More...				over 12 years ago
Merge pull request #8 from sm15/develop	pd3	More...				over 12 years ago
vcfgtcheck fix: added the command into main()	Petr Danecek	More...				over 12 years ago
vcfquery fix: throw an error when no VCF given with -l.	Petr Danecek	More...				over 12 years ago
Merge branch 'develop' of github.com:samtools/htslib into develop	Petr Danecek	More...				over 12 years ago
vcfnorm: New command for normalizing and left-aligning indels.	Petr Danecek	More...				over 12 years ago

←
1
2
…
97
98
99
100
101
102
103
104
105
…
113
114
→