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Analyzed 2 days ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 24, 2024 — Aug 24, 2025 Showing page 104 of 114 Search / Filter on:
vcfcheck: New stats and graph, allelic r2 by AF	Petr Danecek	More...				almost 13 years ago
vcf_parse1: error recovery on missing FILTER/INFO/FORMAT tag definitions	Petr Danecek	More...				almost 13 years ago
plot-vcfcheck: fixex merging of per-sample stats	Petr Danecek	More...				almost 13 years ago
plot-vcfcheck: New --rasterize option for fast PDF rendering	Petr Danecek	More...				almost 13 years ago
Fix in merge_alleles (expand REF if necessary); Normalize local copy of ALT,REF	Petr Danecek	More...				almost 13 years ago
Fixed memset error in vcfmerge	Petr Danecek	More...				almost 13 years ago
merge_format_field: fix in setting missing values	Petr Danecek	More...				almost 13 years ago
Most features of vcfmerge functional now.	Petr Danecek	More...				almost 13 years ago
Allow missing values in lists in VCF output	Petr Danecek	More...				almost 13 years ago
Merge branch 'master' of github.com:pd3/htslib	Petr Danecek	More...				almost 13 years ago
Sanity check allow output from both vcfcheck and plot-vcfcheck -m	Petr Danecek	More...				almost 13 years ago
r200: keep read index in bam1_t	Heng Li	More...				almost 13 years ago
GT merging now functional	Petr Danecek	More...				almost 13 years ago
tmp save	Petr Danecek	More...				almost 13 years ago
Temporary changes	Petr Danecek	More...				almost 13 years ago
New -C, --complement option for vcfisec. bcf_seqnames now returns chromosomes in correct order	Petr Danecek	More...				almost 13 years ago
Fixed a typo which rendered -n <cnt> ineffective.	Petr Danecek	More...				almost 13 years ago
Use uint64_t for DP stats. On behalf of Chris: plot-vcfcheck can now merge per-chromosome vcfcheck files.	Petr Danecek	More...				almost 13 years ago
Do not attempt to read directories in bcf_sr_set_samples	Petr Danecek	More...				almost 13 years ago
New API routine: remove_alleles; get_fmt_ptr	Petr Danecek	More...				almost 13 years ago
New API routine: remove_alleles; get_fmt_ptr	Petr Danecek	More...				almost 13 years ago
New API routine: remove_alleles; get_fmt_ptr	Petr Danecek	More...				almost 13 years ago
Removed repeated call of bcf_unpack_fmt_core in vcf_format1	Petr Danecek	More...				almost 13 years ago
Add missing contigs to the header permanently	Petr Danecek	More...				almost 13 years ago
Plotting Hets vs Homs instead of plain Hets; Sanity check for FS section header	Petr Danecek	More...				almost 13 years ago
Fix in variant type recognition: distinguish indels from complex events	Petr Danecek	More...				almost 13 years ago
In calc_ac check added for different BCF_BT_INT* types; New trim_alleles method	Petr Danecek	More...				almost 13 years ago
Changed order of underscore escaping and line breaking to prevent loss of escape characters	Petr Danecek	More...				almost 13 years ago
Bug fix: variant type not checked in the absence of --collapse option, this affected all vcf* commands	Petr Danecek	More...				almost 13 years ago
Cumulative commit with many changes, including: - symlinking htscmd enables abbreviated commands - header manipulation routines in htslib/vcf.* - test suite for checking consistency - improvements and new features in existing vcf*commands - skeleton of vcfmerge (not fully functional yet) - bugfixes	Petr Danecek	More...				almost 13 years ago

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