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Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.
Jul 22, 2024 — Jul 22, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Add isCanonical() and isPalindrome(), move implementation of reverseComplement() to a helper function. More... almost 7 years ago
Switch from stdout to stderr for ifdef'd diagnostics in kmerCountFileReaderBlock::loadBlock(). More... almost 7 years ago
Update faq.rst More... almost 7 years ago
Tiny bit of code cleanup, moving variable declarations closer to where they're used. More... almost 7 years ago
Skip empty sequences. More... almost 7 years ago
If configuring, allow counting with no output specified. More... almost 7 years ago
If only configuring, return from counting operations before doing anything with the output and etc. More... almost 7 years ago
Rearrange functions. More... almost 7 years ago
Fix breakage probably caused by changes to the kmer writer. More... almost 7 years ago
Change report of expected memory to use slightly. More... almost 7 years ago
Expand scaledNumber() and scaledUnit() to ridiculously large numbers; add scaledName(). More... almost 7 years ago
Delete the sqReadData object when the sqStore input is closed. More... almost 7 years ago
Add option -C to only configure things (and report memory needed for counting). Fix opCount to better estimate memory usage. More... almost 7 years ago
Add a method to return the bytes of memory resident (not just allocated). More... almost 7 years ago
Logging. Report when merging starts, disable details of what is being merged. More... almost 7 years ago
Add getPageSize(). More... almost 7 years ago
Move the pretty-print scaledNumber() and scaledUnit() functions from merylOp-count.C to strings.C. More... almost 7 years ago
Cast a void* to char* before before attempting to pass it to writeToFile(). More... almost 7 years ago
Slightly cleanup to show that we always have a sqStore object. More... almost 7 years ago
Add comments (and an assert) about _scores never being NULL. More... almost 7 years ago
Add note about never using isContained. More... almost 7 years ago
Fail catastrophically if there are no overlaps. More... almost 7 years ago
Fail catastrophically if there are no overlaps. More... almost 7 years ago
Explicitly initialize Left_Delta_Len and Right_Delta_Len in the constructor. More... almost 7 years ago
printf formatting (again). More... almost 7 years ago
Add an assert to ensure coverage is within expected range. More... almost 7 years ago
Ensure the prefix and suffix is at least one bit wide. More... almost 7 years ago
Fix some dangerously mis-indented code. More... almost 7 years ago
Fully clear the _name member. More... almost 7 years ago
Remove unused '_inputFile' member. More... almost 7 years ago