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Analyzed about 12 hours ago. based on code collected about 12 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 18, 2024 — Aug 18, 2025 Showing page 52 of 351 Search / Filter on:
Merge pull request #992 from godotgildor/master	Brian Walenz	More...				about 7 years ago
Initialize the number of overlaps per file to zero. Argh. Issue #959.	Brian P. Walenz	More...				about 7 years ago
Fix indenting and call it 'minimap', not 'mmap', in messages.	Brian P. Walenz	More...				about 7 years ago
Don't declare the precompute done if the fasta exists, declare it done if the mmi exists. Issue #990.	Brian P. Walenz	More...				about 7 years ago
Remove a tiny bit of dead code when dumping fasta for precompute.	Brian P. Walenz	More...				about 7 years ago
Check for existence of minimap2 in bin directory before starting the assembly. Issue #990.	Brian P. Walenz	More...				about 7 years ago
Add conditional compilation symbol IGNORE_FLIPPED_OVERLAPS.	Brian P. Walenz	More...				about 7 years ago
5.7.3 Overlapper Configuration, mhap Algorithm	luyang93	More...				about 7 years ago
Merge branch 'master' of github.com:godotgildor/canu	Brett T. Hannigan	More...				about 7 years ago
Update to DNAnexus grid code * When downloading a file from the cache, make sure that the local file system has the proper directories in place for the file.	Brett T. Hannigan	More...				about 7 years ago
Update to DNAnexus grid code * When downloading a file from the cache, make sure that the local file system has the proper directories in place for the file.	Brett T. Hannigan	More...				about 7 years ago
Updates for DNAnexus running * Change so that a minimum of 128 GB of scratch space is requested per worker * Add restartable entrance points * Set liberal default instance types for main Canu job	Brett T. Hannigan	More...				about 7 years ago
Updates for DNAnexus running * Change so that a minimum of 128 GB of scratch space is requested per worker * Add restartable entrance points * Set liberal default instance types for main Canu job	Brett T. Hannigan	More...				about 7 years ago
Convert kmers-to-ignore to lowercase so they can be found in the hash table.	Brian P. Walenz	More...				about 7 years ago
Dump kmers as 'kmer<tab>count' instead of FASTA.	Brian P. Walenz	More...				about 7 years ago
Swap G and T in kmers to be compatible with the future meryl.	Brian P. Walenz	More...				about 7 years ago
Fix integer overflow when counting the number of overlaps in a single file. CHANGES FILE FORMAT of .oc files. Issue #959.	Brian P. Walenz	More...				about 7 years ago
Fix errors configuring large overlap files, and/or reads with lots of overlaps. Issue #959.	Brian P. Walenz	More...				about 7 years ago
Updating query of DNAnexus for available instance types * Bug fix in parsing output of new dx-get-instance-info.py script	Brett T. Hannigan	More...				about 7 years ago
Updating query of DNAnexus for available instance types * Bug fix in parsing output of new dx-get-instance-info.py script	Brett T. Hannigan	More...				about 7 years ago
Update faq.rst	Sergey Koren	More...				about 7 years ago
Update faq.rst	Sergey Koren	More...				about 7 years ago
Refuse to allow relative paths for java and gnuplot. Issue #962.	Brian P. Walenz	More...				about 7 years ago
Use the string equality test for comparing strings in makeAbsolute().	Brian P. Walenz	More...				about 7 years ago
Check for a too-small memory limit. Fix minor typo in logging.	Brian P. Walenz	More...				about 7 years ago
Add (an overly) verbose mode for (maybe) helping to debug why bucketizer is failing. Issue #959.	Brian P. Walenz	More...				about 7 years ago
Force rerunning of ovStoreBucketizer even if the create#### directory exists. Issue #959.	Brian P. Walenz	More...				about 7 years ago
Correctly count the number of jobs to run when deciding if grid jobs should run here and now.	Brian P. Walenz	More...				about 7 years ago
When creating frequentMers.ignore, accept either FASTA or single-line kmer data.	Brian P. Walenz	More...				about 7 years ago
Updating DNAnexus applet * Removing system requirements as we have moved those to regional options. * Moving dx-get-instance-info.py into resources/bin so that it is deleted in the resources/usr directory upon making the dnanexus target.	Brett T. Hannigan	More...				about 7 years ago

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