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Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.
Jul 22, 2024 — Jul 22, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Remove unused 'bogartPath' member. More... almost 7 years ago
printf() formatting. More... almost 7 years ago
Return true (always) from ovOverlap::fromString(). More... almost 7 years ago
Fix a pile of minor static analysis issues. More... almost 7 years ago
Cleanup a bit; makes it clear we're actually initializing everything. More... almost 7 years ago
printf() formatting. More... almost 7 years ago
Minor: test for 'err.size() > 0' instead of just 'err.size()' (to be consistent with other usages). More... almost 7 years ago
Don't try to load overlaps for reads that don't exist (and thus, don't make static analysis think we're dividing by readLen=0). More... almost 7 years ago
printf() formatting. More... almost 7 years ago
Fix two bugs in setArraySize(); a NULL array on input would crash if it was copied; changing the size of an existing array below its current length would crash too. More... almost 7 years ago
Fix bug in duplicateArray() where the output length is not reset if the output array is not resized. Only affects tgTig::operator=(), a deep copy of a tgTig. More... almost 7 years ago
Don't attempt to duplicateString() a NULL string. More... almost 7 years ago
Initialize the positions before the last writeData(), to make static analysis happy. More... almost 7 years ago
Remove unused nERROR variable. More... almost 7 years ago
Explicitly initialize all members of kmerCountExactLookup. More... almost 7 years ago
Replace AS_UTL_safeRead() and AS_UTL_safeWrite() with (templated) loadFromFile() and writeToFile(). More... almost 7 years ago
Add an assert and comment about potential out-of-bounds array; coverity 187491. More... almost 7 years ago
Update java options to reduce GC time and threads (issue #993) and memory More... almost 7 years ago
update call to seq store creation More... almost 7 years ago
Fix bug which was truncating some large contigs More... almost 7 years ago
Don't initialize arrays that get initialized later. More... almost 7 years ago
Don't initialize non-static class members. More... almost 7 years ago
Fix a couple of integer overflows when there are LOTS of skip kmers. More... almost 7 years ago
Implement 'Plan B'. More... almost 7 years ago
For seqStore inputs, allow counting in N batches using segment=x/N. More... almost 7 years ago
Add debug operation 'compare' to report which kmers differ between two databases. More... almost 7 years ago
Fix error message when kmer size isn't set. More... almost 7 years ago
Enable thread support for constructing the exact lookup table. More... almost 7 years ago
Remove description of --hashstrings (doesn't exist anymore) and remove --maxreadlen (not useful anymore). More... almost 7 years ago
Add an option to dump reverse-complement reads. More... almost 7 years ago