Tags : Browse Projects

Select a tag to browse associated projects and drill deeper into the tag cloud.

samtools

Compare

  Analyzed about 22 hours ago

SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAM tools provide efficient utilities on manipulating alignments in the SAM format.

27.9K lines of code

13 current contributors

16 days since last commit

4 users on Open Hub

Moderate Activity
0.0
 
I Use This

picard

Compare

  Analyzed about 1 year ago

A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.sourceforge.net) format.

77.6K lines of code

0 current contributors

over 3 years since last commit

2 users on Open Hub

Activity Not Available
5.0
 
I Use This
Licenses: No declared licenses

pysam

Compare

  Analyzed 2 days ago

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

154K lines of code

16 current contributors

2 days since last commit

2 users on Open Hub

Moderate Activity
4.0
   
I Use This

Collagene

Compare

  Analyzed about 17 hours ago

Software for cloning

13.5K lines of code

0 current contributors

over 2 years since last commit

1 users on Open Hub

Inactive
0.0
 
I Use This

bio-bwa

Compare

  Analyzed 1 day ago

14.8K lines of code

7 current contributors

24 days since last commit

1 users on Open Hub

Moderate Activity
0.0
 
I Use This

Exome Variant Analysis

Compare

  Analyzed 1 day ago

Exome Variant Analysis Pipeline (NGS Data). Developed in R language, calling external programs for specific tasks. It can be run in parallel using many processors from the same machine, and can be easily extended to run in computer clusters (HPC). Still in its early stages, it's a work in progress ... [More] that is being used already for production in some research centers. Features: * Quality Control * Mapping in a reference genome * Tasks related to variants: ** Calling ** Filtering ** Annotating ** Reporting effects and basic statistics * Sending an email once the run is finished. More information: ueb(a)vhir.org [Less]

2.31K lines of code

0 current contributors

over 4 years since last commit

1 users on Open Hub

Inactive
5.0
 
I Use This
Licenses: CC-BY-SA-3.0, LGPL-3.0+

extellect-utils

Compare

  Analyzed over 1 year ago

A free library of helpful classes that (at the time of writing) I feel are missing from the major libraries such as Microsoft's .NET Framework, Spring.NET and log4net. These types are intended to increase your productivity by letting you reuse something that somebody else has already written and ... [More] unit tested. Please give me any feedback you might have; negative is welcomed as much as positive at this stage! Jono [Less]

5.38K lines of code

1 current contributors

over 2 years since last commit

0 users on Open Hub

Activity Not Available
0.0
 
I Use This

Blat-like Fast Accurate Search Tool

Compare

  Analyzed 13 days ago

BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance.

38K lines of code

0 current contributors

over 5 years since last commit

0 users on Open Hub

Inactive
0.0
 
I Use This
Licenses: No declared licenses

microbial-phenotype-database

Compare

  No analysis available

The Microbial Phenotype Ontology and Database is an effort to bring a well-defined controlled vocabulary to the assignment of properties to various microbes (predominantly Bacteria & Archaea). Aside from a formal ontology of terms, software and human curation of term-specie associations are being developed.

0 lines of code

0 current contributors

0 since last commit

0 users on Open Hub

Activity Not Available
0.0
 
I Use This
Mostly written in language not available
Licenses: GPL-2.0+

sequencing

Compare

  Analyzed over 1 year ago

This project sequences a give set of DNA sequences against Arabidopsis CDS file in TAIR database. It is useful if you want to know how good is your PCR results. The inputs are

930 lines of code

0 current contributors

almost 10 years since last commit

0 users on Open Hub

Activity Not Available
0.0
 
I Use This