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samtools
S
Analyzed 27 days ago
SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAM tools provide efficient utilities on manipulating alignments in the SAM format.
Licenses:
mit
picard
P
Analyzed over 3 years ago
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.sourceforge.net) format.
Mostly written in language not available
Licenses:
No declared licenses
pysam
P
Analyzed about 15 hours ago
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
Exome Variant Analysis
Analyzed about 2 years ago
Exome Variant Analysis Pipeline (NGS Data). Developed in R language, calling external programs for specific tasks. It can be run in parallel using many processors from the same machine, and can be easily extended to run in computer clusters (HPC). Still in its early stages, it's a work in progress
Licenses:
ccbysa3-0, lgpv3_or_...
Molecular Genetics Information System
M
No analysis available
This project is aimed at developing an open source information system for an efficient management of data deriving from Sanger sequencing and microsatellite genotyping experiments.
Mostly written in language not available
Licenses:
No declared licenses
Blat-like Fast Accurate Search Tool
B
Analyzed about 1 year ago
BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance.
Licenses:
No declared licenses
dzerbino's velvet
D
Analyzed about 6 hours ago
Short read de novo assembler using de Bruijn graphs
Licenses:
No declared licenses
MicroRNA Discovery By Deep Sequencing
M
No analysis available
MIREAP is a tool which can be used to identify both known and novel microRNAs from small RNA libraries deeply sequenced by Solexa/454/Solid technology.
Mostly written in language not available
Licenses:
No declared licenses