Tags : Browse Projects

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samtools

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  Analyzed 16 days ago

SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAM tools provide efficient utilities on manipulating alignments in the SAM format.

28.2K lines of code

13 current contributors

about 1 month since last commit

4 users on Open Hub

Moderate Activity
0.0
 
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picard

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  Analyzed over 1 year ago

A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.sourceforge.net) format.

77.6K lines of code

0 current contributors

over 3 years since last commit

2 users on Open Hub

Activity Not Available
5.0
 
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Licenses: No declared licenses

pysam

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  Analyzed 10 days ago

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

159K lines of code

15 current contributors

11 days since last commit

2 users on Open Hub

Moderate Activity
4.0
   
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Collagene

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  Analyzed 14 days ago

Software for cloning

13.5K lines of code

0 current contributors

over 2 years since last commit

1 users on Open Hub

Inactive
0.0
 
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bio-bwa

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  Analyzed 24 days ago

14.8K lines of code

5 current contributors

about 1 month since last commit

1 users on Open Hub

Low Activity
0.0
 
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Exome Variant Analysis

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  Analyzed 24 days ago

Exome Variant Analysis Pipeline (NGS Data). Developed in R language, calling external programs for specific tasks. It can be run in parallel using many processors from the same machine, and can be easily extended to run in computer clusters (HPC). Still in its early stages, it's a work in progress ... [More] that is being used already for production in some research centers. Features: * Quality Control * Mapping in a reference genome * Tasks related to variants: ** Calling ** Filtering ** Annotating ** Reporting effects and basic statistics * Sending an email once the run is finished. More information: ueb(a)vhir.org [Less]

2.31K lines of code

0 current contributors

over 4 years since last commit

1 users on Open Hub

Inactive
5.0
 
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Licenses: CC-BY-SA-3.0, LGPL-3.0+

Molecular Genetics Information System

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  No analysis available

This project is aimed at developing an open source information system for an efficient management of data deriving from Sanger sequencing and microsatellite genotyping experiments.

0 lines of code

0 current contributors

0 since last commit

0 users on Open Hub

Activity Not Available
0.0
 
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Mostly written in language not available
Licenses: No declared licenses

Blat-like Fast Accurate Search Tool

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  Analyzed 18 days ago

BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance.

38K lines of code

0 current contributors

almost 6 years since last commit

0 users on Open Hub

Inactive
0.0
 
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Licenses: No declared licenses

dzerbino's velvet

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  Analyzed 15 days ago

Short read de novo assembler using de Bruijn graphs

113K lines of code

0 current contributors

over 3 years since last commit

0 users on Open Hub

Inactive
0.0
 
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Licenses: No declared licenses

MicroRNA Discovery By Deep Sequencing

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  No analysis available

MIREAP is a tool which can be used to identify both known and novel microRNAs from small RNA libraries deeply sequenced by Solexa/454/Solid technology.

0 lines of code

0 current contributors

0 since last commit

0 users on Open Hub

Activity Not Available
0.0
 
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Mostly written in language not available
Licenses: No declared licenses