Tags : Browse Projects

Select a tag to browse associated projects and drill deeper into the tag cloud.

samtools

Compare

  Analyzed 4 days ago

SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAM tools provide efficient utilities on manipulating alignments in the SAM format.

31.1K lines of code

11 current contributors

5 days since last commit

4 users on Open Hub

Moderate Activity
0.0
 
I Use This

picard

Compare

  Analyzed 13 days ago

A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.sourceforge.net) format.

0 lines of code

0 current contributors

0 since last commit

2 users on Open Hub

Activity Not Available
5.0
 
I Use This
Mostly written in language not available
Licenses: No declared licenses

pysam

Compare

  Analyzed about 9 hours ago

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

167K lines of code

18 current contributors

12 days since last commit

2 users on Open Hub

Moderate Activity
4.0
   
I Use This

Collagene

Compare

  Analyzed 7 minutes ago

Software for cloning

13.5K lines of code

0 current contributors

about 3 years since last commit

1 users on Open Hub

Inactive
0.0
 
I Use This

bio-bwa

Compare

  Analyzed about 7 hours ago

14.8K lines of code

4 current contributors

about 1 month since last commit

1 users on Open Hub

Low Activity
0.0
 
I Use This

Exome Variant Analysis

Compare

  Analyzed 11 minutes ago

Exome Variant Analysis Pipeline (NGS Data). Developed in R language, calling external programs for specific tasks. It can be run in parallel using many processors from the same machine, and can be easily extended to run in computer clusters (HPC). Still in its early stages, it's a work in progress ... [More] that is being used already for production in some research centers. Features: * Quality Control * Mapping in a reference genome * Tasks related to variants: ** Calling ** Filtering ** Annotating ** Reporting effects and basic statistics * Sending an email once the run is finished. More information: ueb(a)vhir.org [Less]

2.31K lines of code

0 current contributors

about 5 years since last commit

1 users on Open Hub

Inactive
5.0
 
I Use This
Licenses: CC-BY-SA-3.0, LGPL-3.0+

Molecular Genetics Information System

Compare

  No analysis available

This project is aimed at developing an open source information system for an efficient management of data deriving from Sanger sequencing and microsatellite genotyping experiments.

0 lines of code

0 current contributors

0 since last commit

0 users on Open Hub

Activity Not Available
0.0
 
I Use This
Mostly written in language not available
Licenses: No declared licenses

Blat-like Fast Accurate Search Tool

Compare

  Analyzed 2 months ago

BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance.

38K lines of code

0 current contributors

over 6 years since last commit

0 users on Open Hub

Activity Not Available
0.0
 
I Use This
Licenses: No declared licenses

dzerbino's velvet

Compare

  Analyzed 4 days ago

Short read de novo assembler using de Bruijn graphs

113K lines of code

0 current contributors

almost 4 years since last commit

0 users on Open Hub

Inactive
0.0
 
I Use This
Licenses: No declared licenses

MicroRNA Discovery By Deep Sequencing

Compare

  No analysis available

MIREAP is a tool which can be used to identify both known and novel microRNAs from small RNA libraries deeply sequenced by Solexa/454/Solid technology.

0 lines of code

0 current contributors

0 since last commit

0 users on Open Hub

Activity Not Available
0.0
 
I Use This
Mostly written in language not available
Licenses: No declared licenses