| Analysis for RNA seq analysis on all samples, adding correlation analysis |
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almost 10 years ago
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| Moving the megaMuga code into 2 folders, since we are splitting the paper |
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almost 10 years ago
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| Need to redo this code we need forward selection |
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almost 10 years ago
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| Analysis of SNP chip data on arabian horses |
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almost 10 years ago
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| Adding miRNA and MT chromosome for RNA sequencing |
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almost 10 years ago
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| Minor updates to muga |
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almost 10 years ago
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| Minor updates showing more ways of QTL mappig |
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almost 10 years ago
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| Seems we didn't extract raw_read_counts for genes on the MT chromosome |
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almost 10 years ago
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| Updaes to the ATB analysis, cleaner and shorter code |
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almost 10 years ago
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| ATB updates, now also for generation 26-27 and 27-28 |
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almost 10 years ago
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| Additive / Dominance effects calculations |
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almost 10 years ago
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| Example to show my PhD student two ways to calculate additive & dominance effects in R |
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almost 10 years ago
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| Minor changes |
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almost 10 years ago
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| Updates to the megaMuga analysis |
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almost 10 years ago
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| Loading in cow genetic and phenotype data |
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almost 10 years ago
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| Update to the SNP calling |
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almost 10 years ago
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| Minor issues, adding a TODO |
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almost 10 years ago
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| Changes to the RNA-Seq analysis scripts, adding more post-processing |
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almost 10 years ago
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| Minor changes, on classical phenotype analysis |
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almost 10 years ago
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| Major updates to the RNA-Seq pipeline |
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almost 10 years ago
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| Moving some code around, trying to keep everything clean |
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almost 10 years ago
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| Finalizing the final image for Sebastiaan |
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almost 10 years ago
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| Adding more samples to Done |
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almost 10 years ago
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| Do not print the stuff which is already done, to prevent us from doing RNASeq analysis double |
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almost 10 years ago
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| Using new names, updated the information slightly |
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almost 10 years ago
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| Updates to sebastiaans phenotype analysis, using a predefined ordering |
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almost 10 years ago
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| Alt and Ref in the analysis of miRNA bindingsites |
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almost 10 years ago
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| Minor updates for the horses |
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almost 10 years ago
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| Updated the spiderplot to show many phenotypes at once |
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almost 10 years ago
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| Adding a new plot for sebastiaan |
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about 10 years ago
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