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Inactive
Commits
: Listings
Analyzed
2 days
ago. based on code collected
2 days
ago.
Aug 20, 2024 — Aug 20, 2025
Showing page 13 of 20
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Blasting the Wellcome probe sequences to the same genome build as the JAX and Atlas data
DannyArends
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over 10 years ago
Loading and processing of the wellcome mouse SNP data (not done by Diversity Array)
DannyArends
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over 10 years ago
Log2 and comparison back to raw RPKM values, seems there isn't a lot of difference (cor=0.99)
DannyArends
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over 10 years ago
Small example on agilent microarray data
DannyArends
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over 10 years ago
import of the code I used to create the comparison of mouse strains from the diversity array
DannyArends
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over 10 years ago
Updates to the PCA analysis in mice
DannyArends
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over 10 years ago
Looking for a new color locus in Kabadina horses
DannyArends
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over 10 years ago
Duplicating the QTL mapping file for the mega muga analysis, so that we can use the PCA genotype correction
DannyArends
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over 10 years ago
Minor changes to the PCA code
DannyArends
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over 10 years ago
Minor updates to the pipeline for RNA Seq in chicken
DannyArends
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over 10 years ago
A lot of updates I forgot to push lately
DannyArends
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over 10 years ago
Regionplot of mouse QTL on chromosome 3, and zoomed into the region 30 mb to 45 mb
DannyArends
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over 10 years ago
Minor updates to the analysis of Kabadina horses
DannyArends
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over 10 years ago
Looking for hetrozygousity in chicken data
DannyArends
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over 10 years ago
Adding a new figure for the AIL (day42)
DannyArends
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over 10 years ago
Working a lil bit more on the horse data
DannyArends
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over 10 years ago
Updates to the kabadiner horse analysis
DannyArends
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over 10 years ago
Code updates to the MegaMuga analysis
DannyArends
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over 10 years ago
Adding initial code to analyse Horse QTL data
DannyArends
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over 10 years ago
Left over updates from before the weekend
DannyArends
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over 10 years ago
Minor updates to the expression analysis, extracting exon level information using the HTseq python code
DannyArends
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over 10 years ago
Adding the scripts to run the data analysis on the cluster
DannyArends
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over 10 years ago
Looking for more information form the Muga Arrays
DannyArends
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over 10 years ago
Minor updates, permutations also as a function restuctured code a little bit
DannyArends
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over 10 years ago
Adding a simple routine to show howto look at hetrozygousity and do permutations
DannyArends
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over 10 years ago
Experimenting with TFBS prediction
DannyArends
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over 10 years ago
Looking for differentially expressed miRNAs in RNA-Seq data
DannyArends
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over 10 years ago
Looking at the top 100 highest expressed genes per tissue
DannyArends
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over 10 years ago
Minor, forgot to save
DannyArends
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over 10 years ago
Adding the annotation to the array data, removing faulty arrays
DannyArends
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over 10 years ago
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