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Commits : Listings

Analyzed 2 days ago. based on code collected 2 days ago.
Aug 20, 2024 — Aug 20, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Blasting the Wellcome probe sequences to the same genome build as the JAX and Atlas data More... over 10 years ago
Loading and processing of the wellcome mouse SNP data (not done by Diversity Array) More... over 10 years ago
Log2 and comparison back to raw RPKM values, seems there isn't a lot of difference (cor=0.99) More... over 10 years ago
Small example on agilent microarray data More... over 10 years ago
import of the code I used to create the comparison of mouse strains from the diversity array More... over 10 years ago
Updates to the PCA analysis in mice More... over 10 years ago
Looking for a new color locus in Kabadina horses More... over 10 years ago
Duplicating the QTL mapping file for the mega muga analysis, so that we can use the PCA genotype correction More... over 10 years ago
Minor changes to the PCA code More... over 10 years ago
Minor updates to the pipeline for RNA Seq in chicken More... over 10 years ago
A lot of updates I forgot to push lately More... over 10 years ago
Regionplot of mouse QTL on chromosome 3, and zoomed into the region 30 mb to 45 mb More... over 10 years ago
Minor updates to the analysis of Kabadina horses More... over 10 years ago
Looking for hetrozygousity in chicken data More... over 10 years ago
Adding a new figure for the AIL (day42) More... over 10 years ago
Working a lil bit more on the horse data More... over 10 years ago
Updates to the kabadiner horse analysis More... over 10 years ago
Code updates to the MegaMuga analysis More... over 10 years ago
Adding initial code to analyse Horse QTL data More... over 10 years ago
Left over updates from before the weekend More... over 10 years ago
Minor updates to the expression analysis, extracting exon level information using the HTseq python code More... over 10 years ago
Adding the scripts to run the data analysis on the cluster More... over 10 years ago
Looking for more information form the Muga Arrays More... over 10 years ago
Minor updates, permutations also as a function restuctured code a little bit More... over 10 years ago
Adding a simple routine to show howto look at hetrozygousity and do permutations More... over 10 years ago
Experimenting with TFBS prediction More... over 10 years ago
Looking for differentially expressed miRNAs in RNA-Seq data More... over 10 years ago
Looking at the top 100 highest expressed genes per tissue More... over 10 years ago
Minor, forgot to save More... over 10 years ago
Adding the annotation to the array data, removing faulty arrays More... over 10 years ago