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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 18, 2024 — Aug 18, 2025 Showing page 11 of 20 Search / Filter on:
Minor updates, adding a retrieve region	DannyArends	More...				almost 10 years ago
Transmission bias	DannyArends	More...				almost 10 years ago
Minor updates to the RNAseq pipeline (more memory for GATK) and updates to the megamuga analysis	DannyArends	More...				almost 10 years ago
Working on the megaMuga	DannyArends	More...				almost 10 years ago
Trying some new stuff on the megaMuga, also using beagle 4.0 now (not 3.2)	DannyArends	More...				almost 10 years ago
Slightly more memory, and a header	DannyArends	More...				almost 10 years ago
Chaning the way the input data is supplied, most code is now unused	DannyArends	More...				almost 10 years ago
Some more code to do the miRNA prediction	DannyArends	More...				almost 10 years ago
Some additional work on the RNA-Seq paper	DannyArends	More...				almost 10 years ago
miRNA in cow updates	DannyArends	More...				almost 10 years ago
Start workign on using PITA for miRNA analysis of UTRs	DannyArends	More...				almost 10 years ago
Adding more annotations, and the expression data to the mouse RNAseq table	DannyArends	More...				almost 10 years ago
Splitting up the big ratio analysis file into more chunked analysis files	DannyArends	More...				almost 10 years ago
Filtering results (ASE) and adding soem TODOs	DannyArends	More...				almost 10 years ago
Updates to the ASE ChiSq testing	DannyArends	More...				almost 10 years ago
Stashing updates before the weekend !	DannyArends	More...				almost 10 years ago
Working on more code for the ASE chi2	DannyArends	More...				almost 10 years ago
More ASE ratio analysis (annotation) by chiSq	DannyArends	More...				almost 10 years ago
More memory (4 to 6) for the GATK steps	DannyArends	More...				almost 10 years ago
Annotation of genetic location using the GTF file format	DannyArends	More...				almost 10 years ago
Working on the reviewer comments, using the chiSQ test for differences towards 50:50 ratios	DannyArends	More...				almost 10 years ago
Minor updates to the pipeline, tophat2 and bowtie2 can both be used. Additional work on the after analysis	DannyArends	More...				almost 10 years ago
Updating the pipeline, and generating all the commands needed to execute the pipeline on all samples	DannyArends	More...				about 10 years ago
Updated the pipeline, and added the vulcanoplot	DannyArends	More...				about 10 years ago
Reworking the pipeline to use bowtie2	DannyArends	More...				about 10 years ago
Minor updates, adding some boxplots for Jaspers analysis	DannyArends	More...				about 10 years ago
Better boxplots for Ramona, making a start with the genotypes on chromosome 12	DannyArends	More...				about 10 years ago
DNAseq paths	DannyArends	More...				about 10 years ago
Initial import of the anova analysis of different fat types in cows hairs for Ramona	DannyArends	More...				about 10 years ago
Updates to the BFMI DNA sequencing analysis, I still do not understand why I do not need to reorder the vcf file	DannyArends	More...				about 10 years ago

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