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Analyzed about 13 hours ago. based on code collected about 13 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Sep 09, 2024 — Sep 09, 2025 Showing page 14 of 20 Search / Filter on:
Minor updates to the pipeline, we can use 3 samples to call SNPs using GATK	DannyArends	More...				over 10 years ago
Starting from the illumina array files, using the R beadstudio package to extract the expression levels	DannyArends	More...				over 10 years ago
Found the raw illumina files, we should start the analysis from there	DannyArends	More...				over 10 years ago
Minor updates to the chicken SNP analysis	DannyArends	More...				over 10 years ago
The chicken DNA Sequencing pipeline we used for tha analysis	DannyArends	More...				over 10 years ago
Updates to the FV3 experiment analysis, using Illumina microarrays	DannyArends	More...				over 10 years ago
Pipeline for DNA Sequencing data n chicken, updates	DannyArends	More...				over 10 years ago
Working on the FV3 data to understand why these arrays are so weird. Additional TFBS predictions in R for mouse	DannyArends	More...				over 10 years ago
Working on FV3 and the TFBS prediciton	DannyArends	More...				over 10 years ago
Trying to figure out what went wrong the the illumina microarrays in FV3	DannyArends	More...				over 10 years ago
Minor updates to annotate the RNA seq SNPs found	DannyArends	More...				over 10 years ago
Added code to test the differentially expressed genes in BFMI versus the B6 at 10 weeks	DannyArends	More...				over 10 years ago
Working on the expression data from 10 week old mice, remapping probes to MM10	DannyArends	More...				over 10 years ago
Updates to the DNA seq pipeline for chicken data	DannyArends	More...				over 10 years ago
Adding an intitial file to remap the probes from the illumina arrays, simple analysis to get the top differentially expressed genes from FV3 and minor updates to the array analysis and gene ontology	DannyArends	More...				over 10 years ago
Minor updates to the array analysis, removing some old code	DannyArends	More...				over 10 years ago
Adding the analysis for the DNA resequencing for Chicken, updated the mouse script to allow flagging of bad probes	DannyArends	More...				over 10 years ago
Averaging over probes that are measured multiple times on the agilent array, and some work related to adding a column to show if probes are single mapping or not	DannyArends	More...				over 10 years ago
Minor changes to the array analysis	DannyArends	More...				over 10 years ago
Working on more up2date figures from the mouse diversity array data for Sebastiaan	DannyArends	More...				over 10 years ago
Minor updates to the region analysis of the mouse diversity array data	DannyArends	More...				over 10 years ago
Adding some more comparisons and plots for the analysis of the diversity arrays	DannyArends	More...				over 10 years ago
Adding files for the regionplot for sebastiaan, adding more information to the SNPanalysisDiabetes.R as well	DannyArends	More...				over 10 years ago
Adding a TODO, some genes might have probes that do not show the pattern we requested in the heatmaps	DannyArends	More...				over 10 years ago
Minor updates to the Mega Muga analysis removing some old code	DannyArends	More...				over 10 years ago
Adding a comment to the gene ontology analysis, adding code to extract our region of interest and the whole chromosome	DannyArends	More...				over 10 years ago
Fixing some errors in the comments	DannyArends	More...				over 10 years ago
Updates to the GO figure code	DannyArends	More...				over 10 years ago
Adding autogenerated GO heatmaps	DannyArends	More...				over 10 years ago
Updates to gene ontology, writing out the subsets of genes found in them	DannyArends	More...				over 10 years ago

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