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Analyzed about 12 hours ago. based on code collected about 12 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 18, 2024 — Aug 18, 2025 Showing page 12 of 20 Search / Filter on:
Initial import of the code for Jaspers master project	DannyArends	More...				about 10 years ago
Minor updates for the MegaMuga analysis, adding a file for the analysis for 2000 individuals	DannyArends	More...				about 10 years ago
Working on updating figures for the paper	DannyArends	More...				about 10 years ago
Updates to the DNA seq	DannyArends	More...				about 10 years ago
Updates to the tophat2 pipeline	DannyArends	More...				about 10 years ago
Minor updates for the figures	DannyArends	More...				about 10 years ago
Minor updates to the MegaMuga analysis, adding the Fat % to the plot	DannyArends	More...				about 10 years ago
Minor updates to dataQC, adding another plot and adding the analysis of the genetic cofactor inclusion	DannyArends	More...				about 10 years ago
Minor updates, need to remember to change paths on the server	DannyArends	More...				about 10 years ago
Adding a figure for Gudrun and the paper, showing the bodyweight of the AIL population generation 28, colored by the top marker	DannyArends	More...				about 10 years ago
A little bit more code to redo the DNA-Seq on the BFMI line	DannyArends	More...				about 10 years ago
Updates to the megaMuga analysis, how to deal with one major effect QTL which is alligned with the population structure ?	DannyArends	More...				about 10 years ago
Minor adjustement to the kabadiner plots	DannyArends	More...				about 10 years ago
BFMI redoing DNA-Seq	DannyArends	More...				about 10 years ago
MegaMuga updates	DannyArends	More...				about 10 years ago
Minor scripts from the last days	DannyArends	More...				about 10 years ago
Working on the megamuga data, and adding the new RNA seq pipeline for tophat	DannyArends	More...				about 10 years ago
Adding permutation	DannyArends	More...				about 10 years ago
Adding a bootstrap example for Shijie Lyu	DannyArends	More...				about 10 years ago
Adding the writeout of the chromosome 3 locus	DannyArends	More...				about 10 years ago
Adding the region zoom figure for the chromosome 3 locus, we now have KASP markers added to the region to narrow down the QTL	DannyArends	More...				about 10 years ago
Updates form the last week, I have been less then diligent in pushing my code	DannyArends	More...				about 10 years ago
TFBS enrichment testing using permutation	DannyArends	More...				about 10 years ago
Updates to the MegaMuga analysis, and the diversity arrays	DannyArends	More...				about 10 years ago
Adding TFBS.R (from Stefan) and the permutation strategy for the different regulatory elements	DannyArends	More...				over 10 years ago
Minor updates QTL mapping Chickens	DannyArends	More...				over 10 years ago
Minor updates, now everything is aligned	DannyArends	More...				over 10 years ago
using the VEP for annotation, and merging ourdata and the wellcome data (3335 SNPs shared)	DannyArends	More...				over 10 years ago
Not working, still commiting	DannyArends	More...				over 10 years ago
More work on the Wellcome data, numeric conversion and such	DannyArends	More...				over 10 years ago

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