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Analyzed about 9 hours ago. based on code collected about 9 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 18, 2024 — Aug 18, 2025 Showing page 19 of 20 Search / Filter on:
Updates to the RNA-seq analysis	DannyArends	More...				about 11 years ago
Harmonizing the different phenotypes	DannyArends	More...				about 11 years ago
Updates to the QTL analysis combining data, and adding to the analysis	DannyArends	More...				about 11 years ago
Adding two more SNP analysis methods, updated the annotation in RNAsequencing (incorrect use of characters as input to an matrix index)	DannyArends	More...				about 11 years ago
Initial work on the QTL mapping, and adding the additive and dominance effects per cross to the RNA seq data analysis	DannyArends	More...				about 11 years ago
Formatting updates to the MRI to Excel converter	DannyArends	More...				about 11 years ago
Small script to transform the output of the MRI machine to Excel format	DannyArends	More...				about 11 years ago
Finishing up the Agilent Arrays	DannyArends	More...				about 11 years ago
Updates to selection on Agilent, removing the duplicate sequences	DannyArends	More...				about 11 years ago
Adding the extraction of regions, biomart query of the regions and sorting to chr and start position	DannyArends	More...				about 11 years ago
BugFix for the chromosome plot, adding the region detector	DannyArends	More...				about 11 years ago
Working on the Agilent arrays	DannyArends	More...				about 11 years ago
Initial import of the data files for RNA-Seq analysis, differential gene expression	DannyArends	More...				about 11 years ago
Updates for the Agilent chip design	DannyArends	More...				about 11 years ago
Working on Genotype data from IL chicken strains	DannyArends	More...				about 11 years ago
Updates to the selection of Agilent arrays, added the FV3 data to base the selection of probes we don't want to have included on the array	DannyArends	More...				about 11 years ago
Fixed a minor bug concerning the location of the microsatelites	DannyArends	More...				about 11 years ago
Some work on chickens and mouse	DannyArends	More...				about 11 years ago
Pedigree analysis to determin wrong/ impossible genotype combination in an trio	DannyArends	More...				about 11 years ago
Adding the initial analysis on the chicken 600K SNP chip	DannyArends	More...				about 11 years ago
Changed the location of the input files	DannyArends	More...				about 11 years ago
Putting the files in a better structure	DannyArends	More...				about 11 years ago
adding two comparison, and a nice colored dendrogram for the Berlin Mouse Strains	DannyArends	More...				about 11 years ago
Minor updates to chromosomeplot, correct folders	DannyArends	More...				about 11 years ago
Created a new directory structure for the analysis of the mouse diversity array. All the analysis files were updated to reflect this	DannyArends	More...				about 11 years ago
Removed a comment, we now have valid data	DannyArends	More...				about 11 years ago
Using JAX known/pseudo gene data to design custom probes for the Agilent platform	DannyArends	More...				about 11 years ago
Initial import of working with Sudanese goats	DannyArends	More...				about 11 years ago
Updates on the analysis of SNP genotypes from the mouse diversity array	DannyArends	More...				about 11 years ago
More updates on the Atlas SNPs, adding a graphical output to determine which regions we need to target	DannyArends	More...				about 11 years ago

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