| Updates to GO, adding: Tissue, Strain analysis |
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over 10 years ago
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| Updates to Gene Ontology |
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over 10 years ago
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| Minor updates to the figures (matB6N to patBFMI |
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over 10 years ago
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| Adding the start of GO analysis |
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over 10 years ago
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| New figure for Sebastiaan |
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over 10 years ago
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| Minor updates to the genome wide image from the muga arrays, updates to the analysis of the Atlas expression data |
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over 10 years ago
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| Updates to the analysis of the chicken microarrays |
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over 10 years ago
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| SNP calling, and adding the initial analysis for the Atlas data |
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over 10 years ago
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| Adding a setup for the chicken analysis, need to add more TODOs |
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over 10 years ago
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| Updates to ASE, adding a new file to do SNP calling |
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over 10 years ago
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| Updates to SNP calling, adding the MegaMuga Mega Plot |
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over 10 years ago
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| Filtering for expression level, fixed the bug for the location, fixed a bug so that the BFMI origin is treated equally to B6N |
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almost 11 years ago
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| Writing the output of the SNP Ratio analysis to a file |
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almost 11 years ago
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| Updates to the RNA sequencing, adding Allele specific Ratio expression code |
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almost 11 years ago
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| Adding comments to the code for QTL mapping in chickens |
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almost 11 years ago
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| Analysis of chicken data 2010, QTL mapping the classical phenotypes |
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almost 11 years ago
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| Updates + PLots + updates chr 3 |
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almost 11 years ago
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| Adding GO to the ASE genes |
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almost 11 years ago
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| Again major updates to the SNP analysis for ASE detection |
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almost 11 years ago
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| More description of the model used |
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almost 11 years ago
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| QTL analysis MUGA chips updated the code, removed some TODOs |
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almost 11 years ago
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| Updates to the MUGA analysis, including all the needed cofactors (see TODO) and doing some more data QC |
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almost 11 years ago
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| Minor updates to the redoing of the SNP calling |
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almost 11 years ago
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| Updates, redoing the SNP analysis using the unifiedgenotyper |
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almost 11 years ago
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| Seems the vcf files have very low coverage numbers compared to the reads in the BAM files |
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almost 11 years ago
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| Minor update, fixing the chromosome column |
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almost 11 years ago
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| Adding TODOs for the MegaMuga SNP arrays, additional analysis of the chromosome 3 locus |
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almost 11 years ago
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| Comparing the normalized values back to MPI |
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almost 11 years ago
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| Some minor code updates, and additional comments |
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almost 11 years ago
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| Updates to the ASE, splitting the MPI comparison out of the expression calculation |
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almost 11 years ago
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