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Analyzed about 15 hours ago. based on code collected about 15 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 20, 2024 — Aug 20, 2025 Showing page 16 of 20 Search / Filter on:
Major updates to imputation, now not based on RPKM anymore, but on the coverage at a certain SNP location	DannyArends	More...				almost 11 years ago
Updates to the ASE analysis	DannyArends	More...				almost 11 years ago
Storing the rawread counts to file as well	DannyArends	More...				almost 11 years ago
Updated the file header	DannyArends	More...				almost 11 years ago
Extracting all the genes in a GO term	DannyArends	More...				almost 11 years ago
Minor typo	DannyArends	More...				almost 11 years ago
Minor fixes + progress	DannyArends	More...				almost 11 years ago
Adding VCF to VEP convertor	DannyArends	More...				almost 11 years ago
Moving some code around	DannyArends	More...				almost 11 years ago
Working on the QTL stuff, added correction for chromosome 3, doesn't change much	DannyArends	More...				almost 11 years ago
Saving genes in the GxE region, minor updates	DannyArends	More...				almost 11 years ago
Updates to the X chromosome interaction	DannyArends	More...				almost 11 years ago
Writing out the SNPs per gene which show ASE	DannyArends	More...				almost 11 years ago
Updates to QTL mapping in the MugaChips, and adding an extra column to the SNP downstream analysis to see in which cross the SNP was detected	DannyArends	More...				almost 11 years ago
Working on the QTL stuff for the MegaMuga arrays	DannyArends	More...				almost 11 years ago
Plot the means in the heatmap	DannyArends	More...				almost 11 years ago
Minor updates, adding GO analysis of the ASE genes, minor updates to annotation of RPKM	DannyArends	More...				almost 11 years ago
Merging SNPs from DNA-Seq data with the RPKM file	DannyArends	More...				almost 11 years ago
Updating RPKM file, adding a better ratio: a<b -b/a	DannyArends	More...				almost 11 years ago
ASE plots in different color and sizes, updates to the filtering	DannyArends	More...				almost 11 years ago
Add TODO	DannyArends	More...				almost 11 years ago
ASE plots and imputation	DannyArends	More...				almost 11 years ago
Updates, adding a TODO item	DannyArends	More...				almost 11 years ago
Imputation version 1 for the ASE genes	DannyArends	More...				almost 11 years ago
Annotating bovine genes for Uwe	DannyArends	More...				almost 11 years ago
Minor updates	DannyArends	More...				almost 11 years ago
Updates to include all the alleles	DannyArends	More...				almost 11 years ago
Minor, updating the code to not calculate thigs two times	DannyArends	More...				almost 11 years ago
Some more work on the imprinted SNPs	DannyArends	More...				almost 11 years ago
Figures for Dominant expression & ASE + small tables of the overlap	DannyArends	More...				almost 11 years ago

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