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Analyzed about 9 hours ago. based on code collected about 9 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 18, 2024 — Aug 18, 2025 Showing page 17 of 20 Search / Filter on:
More work on the allele specific expression RNA-Seq analysis	DannyArends	More...				almost 11 years ago
Updates I forgot to push last friday	DannyArends	More...				almost 11 years ago
Updates to the heatmaps	DannyArends	More...				almost 11 years ago
Creating heatmaps of expression data from the RNA sequencing data	DannyArends	More...				almost 11 years ago
Updates to the gene and SNP analysis from RNA sequencing	DannyArends	More...				almost 11 years ago
Updates to visualize the ASE	DannyArends	More...				almost 11 years ago
Writing out tables for RNA-Seq gene ontology	DannyArends	More...				almost 11 years ago
Writing out the small expression files which show some of the pattern we want to see for Stefan	DannyArends	More...				almost 11 years ago
Removing a TODO, which we did	DannyArends	More...				almost 11 years ago
Updates, separated geneOntology, from the plots	DannyArends	More...				almost 11 years ago
Updates to the RNA-Seq data analysis, extending the biomart example and updating the chicken sample size	DannyArends	More...				almost 11 years ago
Updates to RNA-Seq adding a header to the chicken file	DannyArends	More...				almost 11 years ago
Updates yesterday and today, Pigs and RNA-Seq	DannyArends	More...				almost 11 years ago
Updates to the downstream expression analysis for the MPI RNA-Seq data	DannyArends	More...				almost 11 years ago
Added another figure to the RNA-Seq data analysis on expresison levels	DannyArends	More...				almost 11 years ago
Working on some plots for the expression values from RNA-Seq	DannyArends	More...				almost 11 years ago
Minor RNA-Seq pipeline, also looking at gene expressions which switch origin between the 2 different directions in the F1	DannyArends	More...				almost 11 years ago
Minor updates to the pipeline for RNA-Seq data	DannyArends	More...				almost 11 years ago
Minor changes to the GeneOntology	DannyArends	More...				almost 11 years ago
Minor changes, adding the animals which do not seem correct based on: transmission form parents & heterozygousness on X chromosome	DannyArends	More...				almost 11 years ago
Creating a plot for heterozygous X, adding a subset which 50+ individuals from the grandparental phasing	DannyArends	More...				almost 11 years ago
Minor updates to the code to phase according to grandparents	DannyArends	More...				almost 11 years ago
Initial import of GrandParental phasing algorithm	DannyArends	More...				almost 11 years ago
Also using beagle to phase the parents	DannyArends	More...				almost 11 years ago
Updates to the Muga analysis, reading back the gzipped output data	DannyArends	More...				almost 11 years ago
Working on the MUGA array, using beagle to phase genotypes	DannyArends	More...				almost 11 years ago
Stuff to the correct location	DannyArends	More...				almost 11 years ago
Adding two new plots	DannyArends	More...				almost 11 years ago
Import of the code from the E. faecium experiment	DannyArends	More...				almost 11 years ago
Adding some TODOs removing some that were done	DannyArends	More...				almost 11 years ago

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